Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26908 | 3' | -60.2 | NC_005809.1 | + | 27435 | 0.66 | 0.367825 |
Target: 5'- cGCGCCCggcgGCCGCAGGcccuggCG-CUGGUAUg -3' miRNA: 3'- uUGCGGG----UGGCGUCUa-----GCaGGCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 1168 | 0.66 | 0.342385 |
Target: 5'- cACGCCCcacauagucucGCCGCcgGGGUCGgCCGGguUg -3' miRNA: 3'- uUGCGGG-----------UGGCG--UCUAGCaGGCCguA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 39833 | 0.66 | 0.334191 |
Target: 5'- cACGCCCgagcagcgccggGCCGCGcucaagCGUCCGGCc- -3' miRNA: 3'- uUGCGGG------------UGGCGUcua---GCAGGCCGua -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33849 | 0.66 | 0.326142 |
Target: 5'- cGCGCCCGCCggGCAcAUCuucguGUUCGGCAg -3' miRNA: 3'- uUGCGGGUGG--CGUcUAG-----CAGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 621 | 0.66 | 0.326142 |
Target: 5'- --aGCagCGCCGUGGAcacggCGUCCGGCGUc -3' miRNA: 3'- uugCGg-GUGGCGUCUa----GCAGGCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 28143 | 0.66 | 0.367825 |
Target: 5'- -uCGCCCaacacgguGCCGCAGGcgCGcCUGGCGa -3' miRNA: 3'- uuGCGGG--------UGGCGUCUa-GCaGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 25974 | 0.66 | 0.350722 |
Target: 5'- cGGCGCcaacaCCAUCGCGuGGucggccUCGUCCGGCGc -3' miRNA: 3'- -UUGCG-----GGUGGCGU-CU------AGCAGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33759 | 0.66 | 0.334191 |
Target: 5'- --gGCCCgACCcaGCAGAUCGguacugaCCGGCGc -3' miRNA: 3'- uugCGGG-UGG--CGUCUAGCa------GGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 41745 | 0.66 | 0.326142 |
Target: 5'- -cUGCCCACCugGCcGA-CGUUCGGCAa -3' miRNA: 3'- uuGCGGGUGG--CGuCUaGCAGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 35158 | 0.66 | 0.340734 |
Target: 5'- gGGCGCCCGCUGCucuauacccUGUCCGGUc- -3' miRNA: 3'- -UUGCGGGUGGCGucua-----GCAGGCCGua -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 13385 | 0.66 | 0.342385 |
Target: 5'- cAUGCCCAgCGCGcGGUUGUaggCGGCAUc -3' miRNA: 3'- uUGCGGGUgGCGU-CUAGCAg--GCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 42366 | 0.66 | 0.367825 |
Target: 5'- uGCGCCaguuCGCCGU--GUCGcCCGGCAg -3' miRNA: 3'- uUGCGG----GUGGCGucUAGCaGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 28649 | 0.67 | 0.280887 |
Target: 5'- cGCGCgCAgUGcCAGAUCGgugCCGGCGg -3' miRNA: 3'- uUGCGgGUgGC-GUCUAGCa--GGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 23434 | 0.67 | 0.280887 |
Target: 5'- cGACGCCgGCCgggauGCGGAUgGUUCGcGCGUa -3' miRNA: 3'- -UUGCGGgUGG-----CGUCUAgCAGGC-CGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33223 | 0.67 | 0.280887 |
Target: 5'- nACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 24578 | 0.67 | 0.295395 |
Target: 5'- -cCGgCCACgGuCGGGcCGUCCGGCGUg -3' miRNA: 3'- uuGCgGGUGgC-GUCUaGCAGGCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 24305 | 0.67 | 0.318239 |
Target: 5'- uGACgGCCgGCaaguucucggCGCAGGUCGUgaCCGGCAUc -3' miRNA: 3'- -UUG-CGGgUG----------GCGUCUAGCA--GGCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 12496 | 0.67 | 0.310479 |
Target: 5'- uGGCGCCCgggcGCCGCacaaaGGAUauuUCCGGCAc -3' miRNA: 3'- -UUGCGGG----UGGCG-----UCUAgc-AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 11133 | 0.68 | 0.253579 |
Target: 5'- cGAUGaCCaCGCCGCAGAUCGU--GGCGUc -3' miRNA: 3'- -UUGC-GG-GUGGCGUCUAGCAggCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33367 | 0.68 | 0.260195 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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