Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26908 | 3' | -60.2 | NC_005809.1 | + | 5897 | 1.02 | 0.000589 |
Target: 5'- cAACGCCCACCGCAGAUCGUCCGGCAUc -3' miRNA: 3'- -UUGCGGGUGGCGUCUAGCAGGCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 24672 | 0.72 | 0.125157 |
Target: 5'- cGCGCCCGCCGCGGGccaCGUCCacgcccaGGCu- -3' miRNA: 3'- uUGCGGGUGGCGUCUa--GCAGG-------CCGua -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 34803 | 0.71 | 0.170158 |
Target: 5'- gGACGCCgGC-GCAGAUCGcgCCGGUg- -3' miRNA: 3'- -UUGCGGgUGgCGUCUAGCa-GGCCGua -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 20438 | 0.7 | 0.200116 |
Target: 5'- uGCGCCaguaGCCGCAGGcccUCGuUCCGGUu- -3' miRNA: 3'- uUGCGGg---UGGCGUCU---AGC-AGGCCGua -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 27975 | 0.69 | 0.216753 |
Target: 5'- cGACGCaCUGCUgaaaaGCGGAUCGgccgCCGGCAUc -3' miRNA: 3'- -UUGCG-GGUGG-----CGUCUAGCa---GGCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 30891 | 0.69 | 0.230902 |
Target: 5'- --aGUCCGCCGCAGucugacaccuugggcAgugguguuUCGUCCGGCGUa -3' miRNA: 3'- uugCGGGUGGCGUC---------------U--------AGCAGGCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 400 | 0.69 | 0.23456 |
Target: 5'- gGGCGCCCACCaGCAgcacggcgguGAUCGU-CGGCc- -3' miRNA: 3'- -UUGCGGGUGG-CGU----------CUAGCAgGCCGua -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 11133 | 0.68 | 0.253579 |
Target: 5'- cGAUGaCCaCGCCGCAGAUCGU--GGCGUc -3' miRNA: 3'- -UUGC-GG-GUGGCGUCUAGCAggCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33559 | 0.68 | 0.260195 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33463 | 0.68 | 0.260195 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33415 | 0.68 | 0.260195 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33367 | 0.68 | 0.260195 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33319 | 0.68 | 0.260195 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33271 | 0.68 | 0.260195 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33199 | 0.68 | 0.260195 |
Target: 5'- cACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 13289 | 0.68 | 0.266951 |
Target: 5'- cAGCGCCgAUUGCAGcgCGccggggCCGGCGUu -3' miRNA: 3'- -UUGCGGgUGGCGUCuaGCa-----GGCCGUA- -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 10280 | 0.68 | 0.273848 |
Target: 5'- gGAUGCCC--UGUAGGUCGUCCaGCAc -3' miRNA: 3'- -UUGCGGGugGCGUCUAGCAGGcCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 28649 | 0.67 | 0.280887 |
Target: 5'- cGCGCgCAgUGcCAGAUCGgugCCGGCGg -3' miRNA: 3'- uUGCGgGUgGC-GUCUAGCa--GGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 33223 | 0.67 | 0.280887 |
Target: 5'- nACGgCCACCGCuGG-CGaaUCCGGCAc -3' miRNA: 3'- uUGCgGGUGGCGuCUaGC--AGGCCGUa -5' |
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26908 | 3' | -60.2 | NC_005809.1 | + | 23434 | 0.67 | 0.280887 |
Target: 5'- cGACGCCgGCCgggauGCGGAUgGUUCGcGCGUa -3' miRNA: 3'- -UUGCGGgUGG-----CGUCUAgCAGGC-CGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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