Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26916 | 3' | -59.2 | NC_005809.1 | + | 464 | 0.7 | 0.202908 |
Target: 5'- cAGCUUGCGGgCGCUgucgcGGUCggauGCCUcGGCa -3' miRNA: 3'- -UCGAACGUCgGUGAa----CCGG----CGGA-CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 664 | 0.81 | 0.032209 |
Target: 5'- aGGC-UGUAGCCACcaGGCCGCCUacGGCg -3' miRNA: 3'- -UCGaACGUCGGUGaaCCGGCGGA--CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 715 | 0.69 | 0.231877 |
Target: 5'- -uCUUGuCGGCCAC--GGCCaagucgagcGCCUGGCg -3' miRNA: 3'- ucGAAC-GUCGGUGaaCCGG---------CGGACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 973 | 1.11 | 0.000142 |
Target: 5'- cAGCUUGCAGCCACUUGGCCGCCUGGCg -3' miRNA: 3'- -UCGAACGUCGGUGAACCGGCGGACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 1754 | 0.67 | 0.331594 |
Target: 5'- ----gGCGGUCAUggccGGCCugcGCCUGGCg -3' miRNA: 3'- ucgaaCGUCGGUGaa--CCGG---CGGACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 1962 | 0.66 | 0.362726 |
Target: 5'- gAGCgcGCGGCCcugggggaaggcacGCUguaGGCCGCgaGGUc -3' miRNA: 3'- -UCGaaCGUCGG--------------UGAa--CCGGCGgaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 2830 | 0.66 | 0.407914 |
Target: 5'- uGCUcGCGGCCACgcgcagcgGcGCCagcaccagcgagggGCCUGGUu -3' miRNA: 3'- uCGAaCGUCGGUGaa------C-CGG--------------CGGACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 5342 | 0.67 | 0.315602 |
Target: 5'- cAGCaugGCAucgcGCUGCgUGGCCGCCUGcaccGCg -3' miRNA: 3'- -UCGaa-CGU----CGGUGaACCGGCGGAC----CG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 5688 | 0.67 | 0.323525 |
Target: 5'- uGCUUGcCGGCCuugucCUUGGCCuuGUCggucGGCa -3' miRNA: 3'- uCGAAC-GUCGGu----GAACCGG--CGGa---CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 6771 | 0.69 | 0.250881 |
Target: 5'- uAGUUUGCccGCCACccUGGgaaucuaugaCCGCCUGGUc -3' miRNA: 3'- -UCGAACGu-CGGUGa-ACC----------GGCGGACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 7710 | 0.67 | 0.339811 |
Target: 5'- cGGCUugccgaugaacUGCAGCgCACgcucGGCgGCC-GGCu -3' miRNA: 3'- -UCGA-----------ACGUCG-GUGaa--CCGgCGGaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 8633 | 0.68 | 0.307827 |
Target: 5'- cGC-UGCGGUgGCgaGGUCGCC-GGCc -3' miRNA: 3'- uCGaACGUCGgUGaaCCGGCGGaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 8667 | 0.69 | 0.231877 |
Target: 5'- cGCUgugUGCAGCgGCUgcUGcGCCGCCcaGGUg -3' miRNA: 3'- uCGA---ACGUCGgUGA--AC-CGGCGGa-CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 9210 | 0.66 | 0.374136 |
Target: 5'- cGGCggcGCGGCgCACguucugcGGCgCGCCcGGCg -3' miRNA: 3'- -UCGaa-CGUCG-GUGaa-----CCG-GCGGaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 9385 | 0.71 | 0.166742 |
Target: 5'- uGCauugUGCAGCCACUgcaugucgcgcaGGCCGCg-GGCu -3' miRNA: 3'- uCGa---ACGUCGGUGAa-----------CCGGCGgaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 9634 | 0.69 | 0.238073 |
Target: 5'- ----cGCAGCCG--UGGUCGCcCUGGCc -3' miRNA: 3'- ucgaaCGUCGGUgaACCGGCG-GACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 9962 | 0.66 | 0.365337 |
Target: 5'- cGGCgucGCGGCC-CUUgaccgGGCCaGCUUGGUc -3' miRNA: 3'- -UCGaa-CGUCGGuGAA-----CCGG-CGGACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 10133 | 0.67 | 0.356683 |
Target: 5'- gGGCguagggGCAGUCGCUgccGUCGUCUuGGCa -3' miRNA: 3'- -UCGaa----CGUCGGUGAac-CGGCGGA-CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 11138 | 0.71 | 0.17234 |
Target: 5'- gAGCaguuCGGCCuGCUgcugGGCCGCCUGcGCa -3' miRNA: 3'- -UCGaac-GUCGG-UGAa---CCGGCGGAC-CG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 11578 | 0.72 | 0.162651 |
Target: 5'- aAGCcaUGCcgcccagGGCCGCcggcUGGCCGCCgGGCa -3' miRNA: 3'- -UCGa-ACG-------UCGGUGa---ACCGGCGGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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