Results 1 - 20 of 54 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26916 | 3' | -59.2 | NC_005809.1 | + | 27435 | 0.66 | 0.365337 |
Target: 5'- cGCgcccgGCGGCCGCa-GGCCcugGCgCUGGUa -3' miRNA: 3'- uCGaa---CGUCGGUGaaCCGG---CG-GACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 19028 | 0.69 | 0.238073 |
Target: 5'- gGGUgcgGUAGCC-CUgguagcGGCCGCCggcGGCg -3' miRNA: 3'- -UCGaa-CGUCGGuGAa-----CCGGCGGa--CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 6771 | 0.69 | 0.250881 |
Target: 5'- uAGUUUGCccGCCACccUGGgaaucuaugaCCGCCUGGUc -3' miRNA: 3'- -UCGAACGu-CGGUGa-ACC----------GGCGGACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 33906 | 0.69 | 0.264936 |
Target: 5'- cGGCgcaGCAGCCGCUgcacacagcgauacgGcGCgGCCUGGg -3' miRNA: 3'- -UCGaa-CGUCGGUGAa--------------C-CGgCGGACCg -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 25744 | 0.68 | 0.271152 |
Target: 5'- cGGCg-GCAGCaCGCUgGGCgCGCUgcugGGCg -3' miRNA: 3'- -UCGaaCGUCG-GUGAaCCG-GCGGa---CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 11696 | 0.68 | 0.285384 |
Target: 5'- ---cUGCGGCgGaCUUaGCCGCUUGGCg -3' miRNA: 3'- ucgaACGUCGgU-GAAcCGGCGGACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 8633 | 0.68 | 0.307827 |
Target: 5'- cGC-UGCGGUgGCgaGGUCGCC-GGCc -3' miRNA: 3'- uCGaACGUCGgUGaaCCGGCGGaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 13168 | 0.68 | 0.307827 |
Target: 5'- cGGCcagUGuCGGCCGCgcUGGgCGCCcuUGGCc -3' miRNA: 3'- -UCGa--AC-GUCGGUGa-ACCgGCGG--ACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 16367 | 0.67 | 0.339811 |
Target: 5'- uGUUcUGCGGCUugUUGGUagUGCC-GGCa -3' miRNA: 3'- uCGA-ACGUCGGugAACCG--GCGGaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 39733 | 0.7 | 0.219892 |
Target: 5'- cGCUggUGCuggcGCCGCUgcgcgUGGCCGCgagcacCUGGCc -3' miRNA: 3'- uCGA--ACGu---CGGUGA-----ACCGGCG------GACCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 13439 | 0.7 | 0.2141 |
Target: 5'- cGGCagGCccGCCAgCUUGGCgGCCUcgGGCg -3' miRNA: 3'- -UCGaaCGu-CGGU-GAACCGgCGGA--CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 464 | 0.7 | 0.202908 |
Target: 5'- cAGCUUGCGGgCGCUgucgcGGUCggauGCCUcGGCa -3' miRNA: 3'- -UCGAACGUCgGUGAa----CCGG----CGGA-CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 664 | 0.81 | 0.032209 |
Target: 5'- aGGC-UGUAGCCACcaGGCCGCCUacGGCg -3' miRNA: 3'- -UCGaACGUCGGUGaaCCGGCGGA--CCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 37420 | 0.73 | 0.123296 |
Target: 5'- gGGCgugaGCAGCgAC--GGCCGCCUGcGCg -3' miRNA: 3'- -UCGaa--CGUCGgUGaaCCGGCGGAC-CG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 24570 | 0.73 | 0.130459 |
Target: 5'- uGGCgagGcCGGCCACggucgGGCCGUCcGGCg -3' miRNA: 3'- -UCGaa-C-GUCGGUGaa---CCGGCGGaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 21747 | 0.72 | 0.154739 |
Target: 5'- gGGC--GCGGCCGCguccacauaggacaGGCCGCCcGGCa -3' miRNA: 3'- -UCGaaCGUCGGUGaa------------CCGGCGGaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 11578 | 0.72 | 0.162651 |
Target: 5'- aAGCcaUGCcgcccagGGCCGCcggcUGGCCGCCgGGCa -3' miRNA: 3'- -UCGa-ACG-------UCGGUGa---ACCGGCGGaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 9385 | 0.71 | 0.166742 |
Target: 5'- uGCauugUGCAGCCACUgcaugucgcgcaGGCCGCg-GGCu -3' miRNA: 3'- uCGa---ACGUCGGUGAa-----------CCGGCGgaCCG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 11138 | 0.71 | 0.17234 |
Target: 5'- gAGCaguuCGGCCuGCUgcugGGCCGCCUGcGCa -3' miRNA: 3'- -UCGaac-GUCGG-UGAa---CCGGCGGAC-CG- -5' |
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26916 | 3' | -59.2 | NC_005809.1 | + | 21118 | 0.71 | 0.190152 |
Target: 5'- uGCUUGCugguaucgacgcuGCCcaGCUUGGCCGCCguguccgcgcccUGGUu -3' miRNA: 3'- uCGAACGu------------CGG--UGAACCGGCGG------------ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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