miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26916 5' -54.5 NC_005809.1 + 1010 1.1 0.000729
Target:  5'- uUCACCGCAGCGUCGAACACCUGGAAGg -3'
miRNA:   3'- -AGUGGCGUCGCAGCUUGUGGACCUUC- -5'
26916 5' -54.5 NC_005809.1 + 39744 0.74 0.268455
Target:  5'- gCGCCGCuGCGcguggccgCGAGCACCUGGc-- -3'
miRNA:   3'- aGUGGCGuCGCa-------GCUUGUGGACCuuc -5'
26916 5' -54.5 NC_005809.1 + 14184 0.73 0.321106
Target:  5'- gCGCCGcCGGCGUCGAacuggaACACCUcgccaaGGAAa -3'
miRNA:   3'- aGUGGC-GUCGCAGCU------UGUGGA------CCUUc -5'
26916 5' -54.5 NC_005809.1 + 722 0.72 0.345928
Target:  5'- -gGCCaCGGCcaaGUCGAGCGCCUGGcGGa -3'
miRNA:   3'- agUGGcGUCG---CAGCUUGUGGACCuUC- -5'
26916 5' -54.5 NC_005809.1 + 13466 0.71 0.372096
Target:  5'- -gGgCGCGGUGUCGGGCaugACCUGGgcGa -3'
miRNA:   3'- agUgGCGUCGCAGCUUG---UGGACCuuC- -5'
26916 5' -54.5 NC_005809.1 + 35506 0.71 0.372096
Target:  5'- -gGCCGCGGCGUCauGAAgUACCUGGc-- -3'
miRNA:   3'- agUGGCGUCGCAG--CUU-GUGGACCuuc -5'
26916 5' -54.5 NC_005809.1 + 5472 0.71 0.381112
Target:  5'- aCGCCGCGGuCGUUGAugGUCUGGucGAGg -3'
miRNA:   3'- aGUGGCGUC-GCAGCUugUGGACC--UUC- -5'
26916 5' -54.5 NC_005809.1 + 32241 0.71 0.399579
Target:  5'- aCGCCGCAGCGaCGGcuACgGCCUGGc-- -3'
miRNA:   3'- aGUGGCGUCGCaGCU--UG-UGGACCuuc -5'
26916 5' -54.5 NC_005809.1 + 33884 0.71 0.399579
Target:  5'- aUCugCGCGGCG-C--ACACCUGGgcGg -3'
miRNA:   3'- -AGugGCGUCGCaGcuUGUGGACCuuC- -5'
26916 5' -54.5 NC_005809.1 + 4123 0.7 0.448154
Target:  5'- gCGCUGCAGCGUUGcuucccGGCGCauagUGGAAGc -3'
miRNA:   3'- aGUGGCGUCGCAGC------UUGUGg---ACCUUC- -5'
26916 5' -54.5 NC_005809.1 + 6021 0.7 0.458257
Target:  5'- uUCGCCG--GUGUUGAACACCUuGAAGu -3'
miRNA:   3'- -AGUGGCguCGCAGCUUGUGGAcCUUC- -5'
26916 5' -54.5 NC_005809.1 + 21974 0.7 0.458257
Target:  5'- aCGCCGCcuGGCGaaGGAUACCgaGGAAGc -3'
miRNA:   3'- aGUGGCG--UCGCagCUUGUGGa-CCUUC- -5'
26916 5' -54.5 NC_005809.1 + 16437 0.7 0.472603
Target:  5'- aUCGCCgGCGGCGUUGAACACggcgucguagaucGGggGc -3'
miRNA:   3'- -AGUGG-CGUCGCAGCUUGUGga-----------CCuuC- -5'
26916 5' -54.5 NC_005809.1 + 19281 0.69 0.521231
Target:  5'- aUCGCCGUagaacAGCGUgGu-CGCCUGGGu- -3'
miRNA:   3'- -AGUGGCG-----UCGCAgCuuGUGGACCUuc -5'
26916 5' -54.5 NC_005809.1 + 7620 0.68 0.542983
Target:  5'- gUCG-CGCAGCGcCGGACACgUGGc-- -3'
miRNA:   3'- -AGUgGCGUCGCaGCUUGUGgACCuuc -5'
26916 5' -54.5 NC_005809.1 + 20122 0.68 0.558386
Target:  5'- aCACCGU--CGUCGAAUgccacgccuucggggGCCUGGAAu -3'
miRNA:   3'- aGUGGCGucGCAGCUUG---------------UGGACCUUc -5'
26916 5' -54.5 NC_005809.1 + 28088 0.68 0.57391
Target:  5'- -gGCCGCGGCGUCguauuccgucgcgguGAucguggucacgcgguACGCCUGGucGg -3'
miRNA:   3'- agUGGCGUCGCAG---------------CU---------------UGUGGACCuuC- -5'
26916 5' -54.5 NC_005809.1 + 32857 0.68 0.575022
Target:  5'- -gGCCGCAGacgGUCGGcgccgagauugucGCGCCcgacUGGAAGg -3'
miRNA:   3'- agUGGCGUCg--CAGCU-------------UGUGG----ACCUUC- -5'
26916 5' -54.5 NC_005809.1 + 29139 0.68 0.575022
Target:  5'- -gGCCGCAuuccucugccaucGCcUCGAACACCUGcAAGg -3'
miRNA:   3'- agUGGCGU-------------CGcAGCUUGUGGACcUUC- -5'
26916 5' -54.5 NC_005809.1 + 40551 0.67 0.609721
Target:  5'- aUCGCCuGC-GCGacuucgccagCGAGCGCCUGGGc- -3'
miRNA:   3'- -AGUGG-CGuCGCa---------GCUUGUGGACCUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.