miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26916 5' -54.5 NC_005809.1 + 722 0.72 0.345928
Target:  5'- -gGCCaCGGCcaaGUCGAGCGCCUGGcGGa -3'
miRNA:   3'- agUGGcGUCG---CAGCUUGUGGACCuUC- -5'
26916 5' -54.5 NC_005809.1 + 1010 1.1 0.000729
Target:  5'- uUCACCGCAGCGUCGAACACCUGGAAGg -3'
miRNA:   3'- -AGUGGCGUCGCAGCUUGUGGACCUUC- -5'
26916 5' -54.5 NC_005809.1 + 2839 0.66 0.66596
Target:  5'- cCACgCGCAGCGgCGccAGCACCaGcGAGGg -3'
miRNA:   3'- aGUG-GCGUCGCaGC--UUGUGGaC-CUUC- -5'
26916 5' -54.5 NC_005809.1 + 3763 0.66 0.669322
Target:  5'- cCGCCGCuggacguAGCcUCGGucgugccgaaagccaGCGCCUGGAAu -3'
miRNA:   3'- aGUGGCG-------UCGcAGCU---------------UGUGGACCUUc -5'
26916 5' -54.5 NC_005809.1 + 4123 0.7 0.448154
Target:  5'- gCGCUGCAGCGUUGcuucccGGCGCauagUGGAAGc -3'
miRNA:   3'- aGUGGCGUCGCAGC------UUGUGg---ACCUUC- -5'
26916 5' -54.5 NC_005809.1 + 5023 0.66 0.66596
Target:  5'- aUUACCGacuacuGCGUUGAuauuCGCCUGGuuGg -3'
miRNA:   3'- -AGUGGCgu----CGCAGCUu---GUGGACCuuC- -5'
26916 5' -54.5 NC_005809.1 + 5390 0.66 0.688301
Target:  5'- gUCACUGguGCGcgccgCGAGCACCUu---- -3'
miRNA:   3'- -AGUGGCguCGCa----GCUUGUGGAccuuc -5'
26916 5' -54.5 NC_005809.1 + 5472 0.71 0.381112
Target:  5'- aCGCCGCGGuCGUUGAugGUCUGGucGAGg -3'
miRNA:   3'- aGUGGCGUC-GCAGCUugUGGACC--UUC- -5'
26916 5' -54.5 NC_005809.1 + 6021 0.7 0.458257
Target:  5'- uUCGCCG--GUGUUGAACACCUuGAAGu -3'
miRNA:   3'- -AGUGGCguCGCAGCUUGUGGAcCUUC- -5'
26916 5' -54.5 NC_005809.1 + 6627 0.67 0.643486
Target:  5'- cCGCCGcCAGCuUCGcGCGCUUGGccGg -3'
miRNA:   3'- aGUGGC-GUCGcAGCuUGUGGACCuuC- -5'
26916 5' -54.5 NC_005809.1 + 7620 0.68 0.542983
Target:  5'- gUCG-CGCAGCGcCGGACACgUGGc-- -3'
miRNA:   3'- -AGUgGCGUCGCaGCUUGUGgACCuuc -5'
26916 5' -54.5 NC_005809.1 + 7996 0.66 0.688301
Target:  5'- gCACCaCGGCGUCGGACGugccCUUGGc-- -3'
miRNA:   3'- aGUGGcGUCGCAGCUUGU----GGACCuuc -5'
26916 5' -54.5 NC_005809.1 + 9957 0.66 0.677153
Target:  5'- -gACCGCGGCGUCGcGGC-CCUuGAc- -3'
miRNA:   3'- agUGGCGUCGCAGC-UUGuGGAcCUuc -5'
26916 5' -54.5 NC_005809.1 + 13122 0.67 0.632228
Target:  5'- gUCGCCuGguGCcagGAGCACCUGGGc- -3'
miRNA:   3'- -AGUGG-CguCGcagCUUGUGGACCUuc -5'
26916 5' -54.5 NC_005809.1 + 13466 0.71 0.372096
Target:  5'- -gGgCGCGGUGUCGGGCaugACCUGGgcGa -3'
miRNA:   3'- agUgGCGUCGCAGCUUG---UGGACCuuC- -5'
26916 5' -54.5 NC_005809.1 + 14184 0.73 0.321106
Target:  5'- gCGCCGcCGGCGUCGAacuggaACACCUcgccaaGGAAa -3'
miRNA:   3'- aGUGGC-GUCGCAGCU------UGUGGA------CCUUc -5'
26916 5' -54.5 NC_005809.1 + 14902 0.66 0.699392
Target:  5'- gUCugCGCGGCGaUCu-GCugCUGGccGg -3'
miRNA:   3'- -AGugGCGUCGC-AGcuUGugGACCuuC- -5'
26916 5' -54.5 NC_005809.1 + 16437 0.7 0.472603
Target:  5'- aUCGCCgGCGGCGUUGAACACggcgucguagaucGGggGc -3'
miRNA:   3'- -AGUGG-CGUCGCAGCUUGUGga-----------CCuuC- -5'
26916 5' -54.5 NC_005809.1 + 18027 0.66 0.694963
Target:  5'- aUCGCCGCGcuGCG-CGAccacgcggucaucCACCUGGAc- -3'
miRNA:   3'- -AGUGGCGU--CGCaGCUu------------GUGGACCUuc -5'
26916 5' -54.5 NC_005809.1 + 19046 0.66 0.699392
Target:  5'- -gACCGCGuGCGc----CGCCUGGAAGg -3'
miRNA:   3'- agUGGCGU-CGCagcuuGUGGACCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.