Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26917 | 3' | -56.7 | NC_005809.1 | + | 32965 | 0.66 | 0.587573 |
Target: 5'- aGGCccugaACGUCgAac-UCACGCCCGAGGu -3' miRNA: 3'- gCCG-----UGCAGgUguaGGUGCGGGUUCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 9212 | 0.66 | 0.576593 |
Target: 5'- gCGGCGCGgCgCACGUUCugcggcGCGCCCGGc- -3' miRNA: 3'- -GCCGUGCaG-GUGUAGG------UGCGGGUUcu -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 11214 | 0.66 | 0.56566 |
Target: 5'- cCGcGCAUGaccgCCACGUucccgcCCACGCCCAc-- -3' miRNA: 3'- -GC-CGUGCa---GGUGUA------GGUGCGGGUucu -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 5010 | 0.66 | 0.56566 |
Target: 5'- uCGGCGCaGUCCGCuUUCAgCGCCgCGAu- -3' miRNA: 3'- -GCCGUG-CAGGUGuAGGU-GCGG-GUUcu -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 8053 | 0.66 | 0.56566 |
Target: 5'- -cGC-CGUCCAUGaCgCGCGCCCAGGu -3' miRNA: 3'- gcCGuGCAGGUGUaG-GUGCGGGUUCu -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 23225 | 0.66 | 0.554781 |
Target: 5'- aCGGCAauUCCGCcgCCugGCGCCUguccgAAGAc -3' miRNA: 3'- -GCCGUgcAGGUGuaGG--UGCGGG-----UUCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 39681 | 0.66 | 0.554781 |
Target: 5'- gGGCGCG-CgGCGUCUGUGCCCAu-- -3' miRNA: 3'- gCCGUGCaGgUGUAGGUGCGGGUucu -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 28597 | 0.66 | 0.551529 |
Target: 5'- aGGCcaGCGagUACAagaccuacgcgcuuUCCACGUCCGAGGg -3' miRNA: 3'- gCCG--UGCagGUGU--------------AGGUGCGGGUUCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 18846 | 0.67 | 0.537508 |
Target: 5'- gCGGCAUGUagaaggccgggcggcCCAUGcCCACGUUCGGGAu -3' miRNA: 3'- -GCCGUGCA---------------GGUGUaGGUGCGGGUUCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 38805 | 0.67 | 0.533218 |
Target: 5'- uCGGCACGaCCGaggCUACGUCCAGc- -3' miRNA: 3'- -GCCGUGCaGGUguaGGUGCGGGUUcu -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 38043 | 0.67 | 0.527873 |
Target: 5'- gCGGCACGaccgcccagcacgCCACGUUCAcgggcgcCGCCCGugAGAu -3' miRNA: 3'- -GCCGUGCa------------GGUGUAGGU-------GCGGGU--UCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 1461 | 0.67 | 0.522548 |
Target: 5'- aCGGCGCgGUCgGCGgccUCCugGCaggCCGGGGu -3' miRNA: 3'- -GCCGUG-CAGgUGU---AGGugCG---GGUUCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 21146 | 0.67 | 0.522548 |
Target: 5'- uGGC-CG-CCGUGUCCGCGCCCugGu -3' miRNA: 3'- gCCGuGCaGGUGUAGGUGCGGGuuCu -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 1113 | 0.67 | 0.522548 |
Target: 5'- gCGGCAUGUCgCGCAUCg--GCCCGGu- -3' miRNA: 3'- -GCCGUGCAG-GUGUAGgugCGGGUUcu -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 28201 | 0.67 | 0.522548 |
Target: 5'- gCGGCGCcuuGUCCAgGUcggCCACGCCgAcGAc -3' miRNA: 3'- -GCCGUG---CAGGUgUA---GGUGCGGgUuCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 37147 | 0.67 | 0.511961 |
Target: 5'- --cCACG-CCGcCAUCCGCGCCguGGAg -3' miRNA: 3'- gccGUGCaGGU-GUAGGUGCGGguUCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 23309 | 0.67 | 0.511961 |
Target: 5'- aCGGCGauUCCAgCAUCgACG-CCGAGAa -3' miRNA: 3'- -GCCGUgcAGGU-GUAGgUGCgGGUUCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 15539 | 0.67 | 0.501464 |
Target: 5'- -uGCACGgugCCgGCcUCCACGUCCAGGu -3' miRNA: 3'- gcCGUGCa--GG-UGuAGGUGCGGGUUCu -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 7772 | 0.67 | 0.491063 |
Target: 5'- cCGGCGCGaUCUgcgccgGCGUCCAcccuucgcCGCCCAgcAGGc -3' miRNA: 3'- -GCCGUGC-AGG------UGUAGGU--------GCGGGU--UCU- -5' |
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26917 | 3' | -56.7 | NC_005809.1 | + | 13954 | 0.67 | 0.480763 |
Target: 5'- uGGC-CGgCCuCAUCCGCGCCgguuCAAGGa -3' miRNA: 3'- gCCGuGCaGGuGUAGGUGCGG----GUUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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