miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26917 5' -60 NC_005809.1 + 1095 0.68 0.323428
Target:  5'- aCUUCaUGuuGGCgGCGGUaGGCGGCa- -3'
miRNA:   3'- -GAAGaACugCCG-CGCCAgCCGCCGga -5'
26917 5' -60 NC_005809.1 + 1344 0.68 0.315702
Target:  5'- -----aGGaaGcCGUGGUCGGCGGCCUu -3'
miRNA:   3'- gaagaaCUgcC-GCGCCAGCCGCCGGA- -5'
26917 5' -60 NC_005809.1 + 1453 1.07 0.000382
Target:  5'- cCUUCUUGACGGCGCGGUCGGCGGCCUc -3'
miRNA:   3'- -GAAGAACUGCCGCGCCAGCCGCCGGA- -5'
26917 5' -60 NC_005809.1 + 5413 0.71 0.204219
Target:  5'- cCUUCUgcguacgcuccACGGCGCGGaUGGCGGCg- -3'
miRNA:   3'- -GAAGAac---------UGCCGCGCCaGCCGCCGga -5'
26917 5' -60 NC_005809.1 + 8204 0.68 0.308116
Target:  5'- -aUCgcgcACGGCcucguagucgcGCuGGUCGGCGGCCg -3'
miRNA:   3'- gaAGaac-UGCCG-----------CG-CCAGCCGCCGGa -5'
26917 5' -60 NC_005809.1 + 9226 0.7 0.239867
Target:  5'- gUUCU--GCGGCGCGccCGGCGGCa- -3'
miRNA:   3'- gAAGAacUGCCGCGCcaGCCGCCGga -5'
26917 5' -60 NC_005809.1 + 9330 0.68 0.293364
Target:  5'- -----cGuCGGCGCGGcgggCGGCGGCa- -3'
miRNA:   3'- gaagaaCuGCCGCGCCa---GCCGCCGga -5'
26917 5' -60 NC_005809.1 + 9832 0.69 0.265526
Target:  5'- uCUUCUUgGugGGgGCGGUCauGGCGucaGCCc -3'
miRNA:   3'- -GAAGAA-CugCCgCGCCAG--CCGC---CGGa -5'
26917 5' -60 NC_005809.1 + 10197 0.67 0.372711
Target:  5'- gCUUCcugcugGGCGGC-CGGggccUCGGCGGCg- -3'
miRNA:   3'- -GAAGaa----CUGCCGcGCC----AGCCGCCGga -5'
26917 5' -60 NC_005809.1 + 10690 0.69 0.252428
Target:  5'- -gUCUUGACGGCaGCGcgcaCGGCcucGGCCg -3'
miRNA:   3'- gaAGAACUGCCG-CGCca--GCCG---CCGGa -5'
26917 5' -60 NC_005809.1 + 13666 0.69 0.252428
Target:  5'- --cUUUGugGGacgaGUGGUCGGCgacGGCCa -3'
miRNA:   3'- gaaGAACugCCg---CGCCAGCCG---CCGGa -5'
26917 5' -60 NC_005809.1 + 14011 0.66 0.381406
Target:  5'- -----cGACGuGCGCgccgcgauGGcCGGCGGCCg -3'
miRNA:   3'- gaagaaCUGC-CGCG--------CCaGCCGCCGGa -5'
26917 5' -60 NC_005809.1 + 14728 0.76 0.090499
Target:  5'- gUUCUUGagcaGCGGCGCGGcCGGC-GCCa -3'
miRNA:   3'- gAAGAAC----UGCCGCGCCaGCCGcCGGa -5'
26917 5' -60 NC_005809.1 + 14816 0.67 0.364151
Target:  5'- --cCUcGGCGGCGCugccuucgcccaGGUCgaugccguuGGCGGCCa -3'
miRNA:   3'- gaaGAaCUGCCGCG------------CCAG---------CCGCCGGa -5'
26917 5' -60 NC_005809.1 + 17089 0.67 0.37271
Target:  5'- -----aGcCGGCGCGGuucUCGGCcgGGCCUu -3'
miRNA:   3'- gaagaaCuGCCGCGCC---AGCCG--CCGGA- -5'
26917 5' -60 NC_005809.1 + 17663 0.69 0.272279
Target:  5'- -aUCUUGAUGGCGU---CGGCGGgCUg -3'
miRNA:   3'- gaAGAACUGCCGCGccaGCCGCCgGA- -5'
26917 5' -60 NC_005809.1 + 18033 0.67 0.331294
Target:  5'- gUUCUUGuCGGCG-GGcugcUUGGgGGCCUu -3'
miRNA:   3'- gAAGAACuGCCGCgCC----AGCCgCCGGA- -5'
26917 5' -60 NC_005809.1 + 18392 0.71 0.179859
Target:  5'- -----cGAUGGCGcCGGU-GGCGGCCa -3'
miRNA:   3'- gaagaaCUGCCGC-GCCAgCCGCCGGa -5'
26917 5' -60 NC_005809.1 + 18457 0.7 0.233784
Target:  5'- ----gUGACGGuCGCGGcgcCGGCGGCg- -3'
miRNA:   3'- gaagaACUGCC-GCGCCa--GCCGCCGga -5'
26917 5' -60 NC_005809.1 + 19321 0.69 0.26154
Target:  5'- cCUUCgaUGAaGGCGCGGUCuucggacaggcgccaGGCGGCg- -3'
miRNA:   3'- -GAAGa-ACUgCCGCGCCAG---------------CCGCCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.