Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26917 | 5' | -60 | NC_005809.1 | + | 17089 | 0.67 | 0.37271 |
Target: 5'- -----aGcCGGCGCGGuucUCGGCcgGGCCUu -3' miRNA: 3'- gaagaaCuGCCGCGCC---AGCCG--CCGGA- -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 17663 | 0.69 | 0.272279 |
Target: 5'- -aUCUUGAUGGCGU---CGGCGGgCUg -3' miRNA: 3'- gaAGAACUGCCGCGccaGCCGCCgGA- -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 9330 | 0.68 | 0.293364 |
Target: 5'- -----cGuCGGCGCGGcgggCGGCGGCa- -3' miRNA: 3'- gaagaaCuGCCGCGCCa---GCCGCCGga -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 8204 | 0.68 | 0.308116 |
Target: 5'- -aUCgcgcACGGCcucguagucgcGCuGGUCGGCGGCCg -3' miRNA: 3'- gaAGaac-UGCCG-----------CG-CCAGCCGCCGGa -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 1344 | 0.68 | 0.315702 |
Target: 5'- -----aGGaaGcCGUGGUCGGCGGCCUu -3' miRNA: 3'- gaagaaCUgcC-GCGCCAGCCGCCGGA- -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 18033 | 0.67 | 0.331294 |
Target: 5'- gUUCUUGuCGGCG-GGcugcUUGGgGGCCUu -3' miRNA: 3'- gAAGAACuGCCGCgCC----AGCCgCCGGA- -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 28615 | 0.67 | 0.347445 |
Target: 5'- --cCUUGAaccgGGCGCGGaugaGGCcGGCCa -3' miRNA: 3'- gaaGAACUg---CCGCGCCag--CCG-CCGGa -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 36186 | 0.67 | 0.355729 |
Target: 5'- -----cGAgGGCGCcG-CGGCGGCCg -3' miRNA: 3'- gaagaaCUgCCGCGcCaGCCGCCGGa -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 14816 | 0.67 | 0.364151 |
Target: 5'- --cCUcGGCGGCGCugccuucgcccaGGUCgaugccguuGGCGGCCa -3' miRNA: 3'- gaaGAaCUGCCGCG------------CCAG---------CCGCCGGa -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 19321 | 0.69 | 0.26154 |
Target: 5'- cCUUCgaUGAaGGCGCGGUCuucggacaggcgccaGGCGGCg- -3' miRNA: 3'- -GAAGa-ACUgCCGCGCCAG---------------CCGCCGga -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 10690 | 0.69 | 0.252428 |
Target: 5'- -gUCUUGACGGCaGCGcgcaCGGCcucGGCCg -3' miRNA: 3'- gaAGAACUGCCG-CGCca--GCCG---CCGGa -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 9226 | 0.7 | 0.239867 |
Target: 5'- gUUCU--GCGGCGCGccCGGCGGCa- -3' miRNA: 3'- gAAGAacUGCCGCGCcaGCCGCCGga -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 29321 | 0.75 | 0.104103 |
Target: 5'- aCUUCaaGGCGGUgGCGGUCGcCGGCCa -3' miRNA: 3'- -GAAGaaCUGCCG-CGCCAGCcGCCGGa -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 27521 | 0.74 | 0.126404 |
Target: 5'- gCUUCU---CGGCGCGGUCGG-GGUCUu -3' miRNA: 3'- -GAAGAacuGCCGCGCCAGCCgCCGGA- -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 20607 | 0.73 | 0.12993 |
Target: 5'- cCUUCgccaGGCGGCGUcgcaGGUCGGUgucGGCCUg -3' miRNA: 3'- -GAAGaa--CUGCCGCG----CCAGCCG---CCGGA- -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 39018 | 0.72 | 0.165974 |
Target: 5'- -aUUUauGCGGCGCGGUUGGCGGgaCUg -3' miRNA: 3'- gaAGAacUGCCGCGCCAGCCGCCg-GA- -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 18392 | 0.71 | 0.179859 |
Target: 5'- -----cGAUGGCGcCGGU-GGCGGCCa -3' miRNA: 3'- gaagaaCUGCCGC-GCCAgCCGCCGGa -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 23529 | 0.7 | 0.210741 |
Target: 5'- cCUUCcaGGCGGCgcacGCGGUCGaUGGCCUc -3' miRNA: 3'- -GAAGaaCUGCCG----CGCCAGCcGCCGGA- -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 37203 | 0.7 | 0.216312 |
Target: 5'- ----gUGACauaacccugGGCGCGGUgcaGGCGGCCa -3' miRNA: 3'- gaagaACUG---------CCGCGCCAg--CCGCCGGa -5' |
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26917 | 5' | -60 | NC_005809.1 | + | 18457 | 0.7 | 0.233784 |
Target: 5'- ----gUGACGGuCGCGGcgcCGGCGGCg- -3' miRNA: 3'- gaagaACUGCC-GCGCCa--GCCGCCGga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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