Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26922 | 3' | -60.5 | NC_005809.1 | + | 995 | 0.66 | 0.391913 |
Target: 5'- --cGUCGCCCGCUgccCGCGCCacUGGc -3' miRNA: 3'- cuuCGGCGGGUGGaacGCGCGGc-ACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 18359 | 0.66 | 0.391913 |
Target: 5'- -cGGCCGCUCGCCggacuuugGCaGCGCCuacGUGc -3' miRNA: 3'- cuUCGGCGGGUGGaa------CG-CGCGG---CACc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 6628 | 0.66 | 0.391913 |
Target: 5'- --cGCCGCCaGCUUcGCGCGCU-UGGc -3' miRNA: 3'- cuuCGGCGGgUGGAaCGCGCGGcACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 31507 | 0.66 | 0.386588 |
Target: 5'- --uGCCGCCgGCgUgcugcugggccucgcUGUGuUGCCGUGGa -3' miRNA: 3'- cuuCGGCGGgUGgA---------------ACGC-GCGGCACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 19716 | 0.66 | 0.383065 |
Target: 5'- aGAAGCaGCCCAauUCgcagcGCGCGCUGUcGGc -3' miRNA: 3'- -CUUCGgCGGGU--GGaa---CGCGCGGCA-CC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 24126 | 0.66 | 0.383065 |
Target: 5'- aGggGUCGUaguCCAgCCggcUGCGCGCC-UGGc -3' miRNA: 3'- -CuuCGGCG---GGU-GGa--ACGCGCGGcACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 16593 | 0.66 | 0.383065 |
Target: 5'- cGAGGCCGaCCACgCgaugguguugGCGCcGCCGUuGGu -3' miRNA: 3'- -CUUCGGCgGGUG-Gaa--------CGCG-CGGCA-CC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 29667 | 0.66 | 0.374351 |
Target: 5'- --cGuuGCCCAgCaggGCGCGgCCGUGu -3' miRNA: 3'- cuuCggCGGGUgGaa-CGCGC-GGCACc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 27830 | 0.66 | 0.374351 |
Target: 5'- --cGCUGCCCGCggUG-GCGCCGg-- -3' miRNA: 3'- cuuCGGCGGGUGgaACgCGCGGCacc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 41929 | 0.66 | 0.370903 |
Target: 5'- aAAGCC-CCCGCCUgacccguucaccCGCGCCGaGGc -3' miRNA: 3'- cUUCGGcGGGUGGAac----------GCGCGGCaCC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 14242 | 0.66 | 0.365771 |
Target: 5'- cGAGGCCaagGCCaucgaguccgaCGCCgaGCGCGCCGa-- -3' miRNA: 3'- -CUUCGG---CGG-----------GUGGaaCGCGCGGCacc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 38484 | 0.66 | 0.357329 |
Target: 5'- --cGCCGCCCACCUgGCcgGC-CUGaUGGc -3' miRNA: 3'- cuuCGGCGGGUGGAaCG--CGcGGC-ACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 30139 | 0.66 | 0.357329 |
Target: 5'- --cGCCGCCgGCCUgcacCGCGUCGg-- -3' miRNA: 3'- cuuCGGCGGgUGGAac--GCGCGGCacc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 25744 | 0.66 | 0.357329 |
Target: 5'- -cGGCgGCagcaCGCUggGCGCGCUGcUGGg -3' miRNA: 3'- cuUCGgCGg---GUGGaaCGCGCGGC-ACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 23469 | 0.66 | 0.349024 |
Target: 5'- ----aCGCCgGCgUggaacagGUGCGCCGUGGg -3' miRNA: 3'- cuucgGCGGgUGgAa------CGCGCGGCACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 25259 | 0.67 | 0.344108 |
Target: 5'- cAAGCCgGCCCauauGCCggaauggaUGCGCGCCcgcggcgccggcuucGUGGa -3' miRNA: 3'- cUUCGG-CGGG----UGGa-------ACGCGCGG---------------CACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 16943 | 0.67 | 0.340858 |
Target: 5'- cGgcGCCGUCCAgCa-GCGUGCCGcguUGGu -3' miRNA: 3'- -CuuCGGCGGGUgGaaCGCGCGGC---ACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 16956 | 0.67 | 0.340858 |
Target: 5'- --cGCUGCUggCGCC--GCGcCGCCGUGGu -3' miRNA: 3'- cuuCGGCGG--GUGGaaCGC-GCGGCACC- -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 34846 | 0.67 | 0.33283 |
Target: 5'- cAAGCCGgCCGCCgagcGUGCGCUGc-- -3' miRNA: 3'- cUUCGGCgGGUGGaa--CGCGCGGCacc -5' |
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26922 | 3' | -60.5 | NC_005809.1 | + | 11328 | 0.67 | 0.331242 |
Target: 5'- --cGUCGCCCGgCUcguagcugggccGCGCGCCG-GGg -3' miRNA: 3'- cuuCGGCGGGUgGAa-----------CGCGCGGCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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