Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26928 | 3' | -55.8 | NC_005809.1 | + | 8663 | 0.74 | 0.198017 |
Target: 5'- cGCGCGGUCGGC-AUUGC-GUGCCGc -3' miRNA: 3'- aCGCGUCAGUCGcUAACGuCGUGGCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 8686 | 0.7 | 0.359483 |
Target: 5'- cGCGCAccUCGGCG-UUGguGUACUGGc -3' miRNA: 3'- aCGCGUc-AGUCGCuAACguCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 8992 | 0.7 | 0.350842 |
Target: 5'- cGCGaUAGcCAGCGGUgGCcGUGCCGGa -3' miRNA: 3'- aCGC-GUCaGUCGCUAaCGuCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 9136 | 0.7 | 0.350842 |
Target: 5'- cGCGaUAGcCAGCGGUgGCcGUGCCGGa -3' miRNA: 3'- aCGC-GUCaGUCGCUAaCGuCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 9280 | 0.7 | 0.350842 |
Target: 5'- cGCGaUAGcCAGCGGUgGCcGUGCCGGa -3' miRNA: 3'- aCGC-GUCaGUCGCUAaCGuCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 9324 | 0.7 | 0.377207 |
Target: 5'- gGCGCAcGUCGGCGcg-GCgGGCGgCGGc -3' miRNA: 3'- aCGCGU-CAGUCGCuaaCG-UCGUgGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 10235 | 0.66 | 0.604348 |
Target: 5'- aGCGaccuGGgCGGCGGUUGUcgGGaCGCCGGc -3' miRNA: 3'- aCGCg---UCaGUCGCUAACG--UC-GUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 10868 | 0.69 | 0.433786 |
Target: 5'- cGCGCggcgggcuGGUCAgGCGGUgcUGCAGCaguuACUGGu -3' miRNA: 3'- aCGCG--------UCAGU-CGCUA--ACGUCG----UGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 11041 | 0.67 | 0.536804 |
Target: 5'- gGCGCuGUuuccacggcaacaCAGCGAggcccaGCAGCacGCCGGc -3' miRNA: 3'- aCGCGuCA-------------GUCGCUaa----CGUCG--UGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 11250 | 0.66 | 0.570887 |
Target: 5'- aGCGU----GGCGAUgaggguuugcgcUGCGGCGCUGGg -3' miRNA: 3'- aCGCGucagUCGCUA------------ACGUCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 11744 | 0.67 | 0.505579 |
Target: 5'- uUGUGCGaacugaUCGGCGAcaggUUGCAGCggauuuGCCGGc -3' miRNA: 3'- -ACGCGUc-----AGUCGCU----AACGUCG------UGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 13280 | 0.73 | 0.252098 |
Target: 5'- gGCGUcuuUCAGCgccGAUUGCAGCgcGCCGGg -3' miRNA: 3'- aCGCGuc-AGUCG---CUAACGUCG--UGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 13394 | 0.69 | 0.39551 |
Target: 5'- cGCGCGGUUguaGGCGGcaucgUUGCGGUAaCGGu -3' miRNA: 3'- aCGCGUCAG---UCGCU-----AACGUCGUgGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 13703 | 0.7 | 0.386287 |
Target: 5'- cGC-CAG-CAGCGAggacguggcGCGGCGCUGGg -3' miRNA: 3'- aCGcGUCaGUCGCUaa-------CGUCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 13904 | 0.67 | 0.559826 |
Target: 5'- gGCGUcggGGUUguuccaguucagGGCGAUgucgcGCAGCGCCGu -3' miRNA: 3'- aCGCG---UCAG------------UCGCUAa----CGUCGUGGCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 14359 | 0.68 | 0.484506 |
Target: 5'- cGCGguGUCcuggaaGGCGGggGCAuccGCGCCGcGg -3' miRNA: 3'- aCGCguCAG------UCGCUaaCGU---CGUGGC-C- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 14741 | 0.68 | 0.474127 |
Target: 5'- gGCGCGGcCGGCGccaccgcggGCAGCGCgCGc -3' miRNA: 3'- aCGCGUCaGUCGCuaa------CGUCGUG-GCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 15112 | 0.66 | 0.611075 |
Target: 5'- gUGCGCGGcgcgcuggcauacCAGCGccagggccUGCGGCcGCCGGg -3' miRNA: 3'- -ACGCGUCa------------GUCGCua------ACGUCG-UGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 15450 | 0.69 | 0.403931 |
Target: 5'- cGCGCGgcGUCAGCu-UUGCaggcuaaGGCACUGGu -3' miRNA: 3'- aCGCGU--CAGUCGcuAACG-------UCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 15571 | 0.69 | 0.433786 |
Target: 5'- gGCGCcGUCAGUGAcgacGC-GCugCGGa -3' miRNA: 3'- aCGCGuCAGUCGCUaa--CGuCGugGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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