Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26928 | 3' | -55.8 | NC_005809.1 | + | 307 | 0.66 | 0.582001 |
Target: 5'- cGCGCucuuccGUcCAGgGcgUGCcGUACCGGg -3' miRNA: 3'- aCGCGu-----CA-GUCgCuaACGuCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 393 | 0.69 | 0.432803 |
Target: 5'- aGCGCGGcCAGCGcgcgacuGUUgaGCAGCACgucgCGGg -3' miRNA: 3'- aCGCGUCaGUCGC-------UAA--CGUCGUG----GCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 455 | 0.67 | 0.505579 |
Target: 5'- cUGCGCGGcCAGC--UUGCgGGCGCUGu -3' miRNA: 3'- -ACGCGUCaGUCGcuAACG-UCGUGGCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 608 | 0.68 | 0.474127 |
Target: 5'- cUGCG-GGUCGGCca--GCAGCGCCGu -3' miRNA: 3'- -ACGCgUCAGUCGcuaaCGUCGUGGCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 1348 | 0.7 | 0.386287 |
Target: 5'- aGcCGUGGUCGGCGGccUUGC-GCAuCCGGc -3' miRNA: 3'- aC-GCGUCAGUCGCU--AACGuCGU-GGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 1463 | 0.79 | 0.092205 |
Target: 5'- gGCGCGGUCGGCGGccuccugGCAG-GCCGGg -3' miRNA: 3'- aCGCGUCAGUCGCUaa-----CGUCgUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 2128 | 0.69 | 0.414376 |
Target: 5'- uUGCGCcGUUGGCGAgUUGCAGgCACUu- -3' miRNA: 3'- -ACGCGuCAGUCGCU-AACGUC-GUGGcc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 2842 | 0.69 | 0.414376 |
Target: 5'- cGCGCAG-CGGCGc---CAGCACCa- -3' miRNA: 3'- aCGCGUCaGUCGCuaacGUCGUGGcc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 3562 | 0.68 | 0.494992 |
Target: 5'- aGCGCAG-CAGCGGgcuggGCGuaCACCGa -3' miRNA: 3'- aCGCGUCaGUCGCUaa---CGUc-GUGGCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 4250 | 0.76 | 0.145892 |
Target: 5'- gGCGUAGUCGGUGccgGCcgucAGCGCCGGc -3' miRNA: 3'- aCGCGUCAGUCGCuaaCG----UCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 4381 | 0.7 | 0.368272 |
Target: 5'- aUGCGCAGcCAgGCGcc-GUcGCGCCGGg -3' miRNA: 3'- -ACGCGUCaGU-CGCuaaCGuCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 5012 | 0.67 | 0.505579 |
Target: 5'- gGCGCAGUCcGCu-UU-CAGCGCCGc -3' miRNA: 3'- aCGCGUCAGuCGcuAAcGUCGUGGCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 5242 | 0.67 | 0.505579 |
Target: 5'- cGCGCAGuUCGGCcg--GCAGguCgGGg -3' miRNA: 3'- aCGCGUC-AGUCGcuaaCGUCguGgCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 6176 | 0.67 | 0.56535 |
Target: 5'- aGCGCAGgccggucuugccgCAGCGuUUGCaggugacGGCGCgCGGc -3' miRNA: 3'- aCGCGUCa------------GUCGCuAACG-------UCGUG-GCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 7311 | 0.73 | 0.251435 |
Target: 5'- gGCGCcgucgauGGUCuGCGAacGCAGCAgCCGGu -3' miRNA: 3'- aCGCG-------UCAGuCGCUaaCGUCGU-GGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 7537 | 0.66 | 0.604348 |
Target: 5'- gUGCGCucggCGGCGugcucgaucUGCGGCGCCa- -3' miRNA: 3'- -ACGCGuca-GUCGCua-------ACGUCGUGGcc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 7599 | 0.68 | 0.443686 |
Target: 5'- gGCGaCGGUggaCAGCacguGGUcgcGCAGCGCCGGa -3' miRNA: 3'- aCGC-GUCA---GUCG----CUAa--CGUCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 7749 | 1.1 | 0.000538 |
Target: 5'- cUGCGCAGUCAGCGAUUGCAGCACCGGc -3' miRNA: 3'- -ACGCGUCAGUCGCUAACGUCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 8305 | 0.68 | 0.443686 |
Target: 5'- aGUGCAGcCAGCGGU-GC-GCGCUGc -3' miRNA: 3'- aCGCGUCaGUCGCUAaCGuCGUGGCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 8656 | 0.66 | 0.593157 |
Target: 5'- cGCGCcGUacucgcugugugCAGCGGcUGCuGCGCCGc -3' miRNA: 3'- aCGCGuCA------------GUCGCUaACGuCGUGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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