Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26928 | 3' | -55.8 | NC_005809.1 | + | 17542 | 0.66 | 0.604348 |
Target: 5'- cGCGUugacuugauuGGUCAGaauGAUguCGGCGCCGGu -3' miRNA: 3'- aCGCG----------UCAGUCg--CUAacGUCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 37442 | 0.66 | 0.616687 |
Target: 5'- cUGCGCGGcacguugcaguucaaCGGCGccaGCcGCACCGGa -3' miRNA: 3'- -ACGCGUCa--------------GUCGCuaaCGuCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 18822 | 0.66 | 0.604348 |
Target: 5'- gGCGCAGgaagCuGCGAauuUUGCgcGGCauguagaagGCCGGg -3' miRNA: 3'- aCGCGUCa---GuCGCU---AACG--UCG---------UGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 25797 | 0.66 | 0.604348 |
Target: 5'- cGCGCGGcgcgcUCGGUaucGUUGaucuGCACCGGg -3' miRNA: 3'- aCGCGUC-----AGUCGc--UAACgu--CGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 11250 | 0.66 | 0.570887 |
Target: 5'- aGCGU----GGCGAUgaggguuugcgcUGCGGCGCUGGg -3' miRNA: 3'- aCGCGucagUCGCUA------------ACGUCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 10235 | 0.66 | 0.604348 |
Target: 5'- aGCGaccuGGgCGGCGGUUGUcgGGaCGCCGGc -3' miRNA: 3'- aCGCg---UCaGUCGCUAACG--UC-GUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 27865 | 0.66 | 0.593157 |
Target: 5'- gGCGCAGggcauggaGGCGcaacUGCAG-GCCGGg -3' miRNA: 3'- aCGCGUCag------UCGCua--ACGUCgUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 18367 | 0.66 | 0.593157 |
Target: 5'- uUGC-CGG-CGGCGAgguuggccUUGCcgauGGCGCCGGu -3' miRNA: 3'- -ACGcGUCaGUCGCU--------AACG----UCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 8656 | 0.66 | 0.593157 |
Target: 5'- cGCGCcGUacucgcugugugCAGCGGcUGCuGCGCCGc -3' miRNA: 3'- aCGCGuCA------------GUCGCUaACGuCGUGGCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 28911 | 0.66 | 0.586459 |
Target: 5'- gUGCGCGGUCAuaucaccaaggacauG-GAcgGC-GCGCCGGa -3' miRNA: 3'- -ACGCGUCAGU---------------CgCUaaCGuCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 15112 | 0.66 | 0.611075 |
Target: 5'- gUGCGCGGcgcgcuggcauacCAGCGccagggccUGCGGCcGCCGGg -3' miRNA: 3'- -ACGCGUCa------------GUCGCua------ACGUCG-UGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 7537 | 0.66 | 0.604348 |
Target: 5'- gUGCGCucggCGGCGugcucgaucUGCGGCGCCa- -3' miRNA: 3'- -ACGCGuca-GUCGCua-------ACGUCGUGGcc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 307 | 0.66 | 0.582001 |
Target: 5'- cGCGCucuuccGUcCAGgGcgUGCcGUACCGGg -3' miRNA: 3'- aCGCGu-----CA-GUCgCuaACGuCGUGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 21809 | 0.67 | 0.527037 |
Target: 5'- cGCGCgaugAGUCgAGCGcggcGCAGCGCCu- -3' miRNA: 3'- aCGCG----UCAG-UCGCuaa-CGUCGUGGcc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 11041 | 0.67 | 0.536804 |
Target: 5'- gGCGCuGUuuccacggcaacaCAGCGAggcccaGCAGCacGCCGGc -3' miRNA: 3'- aCGCGuCA-------------GUCGCUaa----CGUCG--UGGCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 5242 | 0.67 | 0.505579 |
Target: 5'- cGCGCAGuUCGGCcg--GCAGguCgGGg -3' miRNA: 3'- aCGCGUC-AGUCGcuaaCGUCguGgCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 13904 | 0.67 | 0.559826 |
Target: 5'- gGCGUcggGGUUguuccaguucagGGCGAUgucgcGCAGCGCCGu -3' miRNA: 3'- aCGCG---UCAG------------UCGCUAa----CGUCGUGGCc -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 18716 | 0.67 | 0.548826 |
Target: 5'- aGCGCA-UCGGUacg-GCGGCACgGGa -3' miRNA: 3'- aCGCGUcAGUCGcuaaCGUCGUGgCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 24304 | 0.67 | 0.516263 |
Target: 5'- gGCGgugaGGUCGGCGA--GCAGC-CgCGGg -3' miRNA: 3'- aCGCg---UCAGUCGCUaaCGUCGuG-GCC- -5' |
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26928 | 3' | -55.8 | NC_005809.1 | + | 455 | 0.67 | 0.505579 |
Target: 5'- cUGCGCGGcCAGC--UUGCgGGCGCUGu -3' miRNA: 3'- -ACGCGUCaGUCGcuAACG-UCGUGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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