miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26928 3' -55.8 NC_005809.1 + 7749 1.1 0.000538
Target:  5'- cUGCGCAGUCAGCGAUUGCAGCACCGGc -3'
miRNA:   3'- -ACGCGUCAGUCGCUAACGUCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 1463 0.79 0.092205
Target:  5'- gGCGCGGUCGGCGGccuccugGCAG-GCCGGg -3'
miRNA:   3'- aCGCGUCAGUCGCUaa-----CGUCgUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 4250 0.76 0.145892
Target:  5'- gGCGUAGUCGGUGccgGCcgucAGCGCCGGc -3'
miRNA:   3'- aCGCGUCAGUCGCuaaCG----UCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 19069 0.74 0.192675
Target:  5'- aGCGUguccucgccgaGGUCAcGCGAUUGCAG-GCCGGc -3'
miRNA:   3'- aCGCG-----------UCAGU-CGCUAACGUCgUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 8663 0.74 0.198017
Target:  5'- cGCGCGGUCGGC-AUUGC-GUGCCGc -3'
miRNA:   3'- aCGCGUCAGUCGcUAACGuCGUGGCc -5'
26928 3' -55.8 NC_005809.1 + 29600 0.74 0.220687
Target:  5'- cGCGCGGUUuGCcaGUUGUccAGCGCCGGg -3'
miRNA:   3'- aCGCGUCAGuCGc-UAACG--UCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 24555 0.73 0.226691
Target:  5'- cGCGCAGcgCGGCGAUgGCGagGCCGGc -3'
miRNA:   3'- aCGCGUCa-GUCGCUAaCGUcgUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 7311 0.73 0.251435
Target:  5'- gGCGCcgucgauGGUCuGCGAacGCAGCAgCCGGu -3'
miRNA:   3'- aCGCG-------UCAGuCGCUaaCGUCGU-GGCC- -5'
26928 3' -55.8 NC_005809.1 + 39821 0.73 0.252098
Target:  5'- gGCaGUGGUCGGCacgcccgaGCAGCGCCGGg -3'
miRNA:   3'- aCG-CGUCAGUCGcuaa----CGUCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 13280 0.73 0.252098
Target:  5'- gGCGUcuuUCAGCgccGAUUGCAGCgcGCCGGg -3'
miRNA:   3'- aCGCGuc-AGUCG---CUAACGUCG--UGGCC- -5'
26928 3' -55.8 NC_005809.1 + 23745 0.72 0.279804
Target:  5'- cGCGCAG-CAGCGccAUgccgGCGcCACCGGg -3'
miRNA:   3'- aCGCGUCaGUCGC--UAa---CGUcGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 33152 0.71 0.309877
Target:  5'- gUGCGCgaAGUgGGCGAUggUGgAGUugCGGa -3'
miRNA:   3'- -ACGCG--UCAgUCGCUA--ACgUCGugGCC- -5'
26928 3' -55.8 NC_005809.1 + 30178 0.7 0.342349
Target:  5'- gGCGcCAGUCGGUGAagGCcaugaaguAGCcGCCGGg -3'
miRNA:   3'- aCGC-GUCAGUCGCUaaCG--------UCG-UGGCC- -5'
26928 3' -55.8 NC_005809.1 + 9136 0.7 0.350842
Target:  5'- cGCGaUAGcCAGCGGUgGCcGUGCCGGa -3'
miRNA:   3'- aCGC-GUCaGUCGCUAaCGuCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 9280 0.7 0.350842
Target:  5'- cGCGaUAGcCAGCGGUgGCcGUGCCGGa -3'
miRNA:   3'- aCGC-GUCaGUCGCUAaCGuCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 8992 0.7 0.350842
Target:  5'- cGCGaUAGcCAGCGGUgGCcGUGCCGGa -3'
miRNA:   3'- aCGC-GUCaGUCGCUAaCGuCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 8686 0.7 0.359483
Target:  5'- cGCGCAccUCGGCG-UUGguGUACUGGc -3'
miRNA:   3'- aCGCGUc-AGUCGCuAACguCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 4381 0.7 0.368272
Target:  5'- aUGCGCAGcCAgGCGcc-GUcGCGCCGGg -3'
miRNA:   3'- -ACGCGUCaGU-CGCuaaCGuCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 27719 0.7 0.368272
Target:  5'- gGCGCc--CAGCG--UGCGGCGCUGGc -3'
miRNA:   3'- aCGCGucaGUCGCuaACGUCGUGGCC- -5'
26928 3' -55.8 NC_005809.1 + 9324 0.7 0.377207
Target:  5'- gGCGCAcGUCGGCGcg-GCgGGCGgCGGc -3'
miRNA:   3'- aCGCGU-CAGUCGCuaaCG-UCGUgGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.