miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26928 5' -64.2 NC_005809.1 + 7929 0.72 0.092416
Target:  5'- gCGCuCGGCGUCCACCUUcaCGCCacgGCCa- -3'
miRNA:   3'- -GCG-GCCGCAGGUGGGAa-GCGG---CGGgu -5'
26928 5' -64.2 NC_005809.1 + 41843 0.66 0.24409
Target:  5'- gGCCGGCGUugUCGgCaaa-GCCGCCCc -3'
miRNA:   3'- gCGGCCGCA--GGUgGgaagCGGCGGGu -5'
26928 5' -64.2 NC_005809.1 + 14364 0.66 0.250211
Target:  5'- uCGUCGGCGUggCCgACCUggacaaggCGCCGCaCCu -3'
miRNA:   3'- -GCGGCCGCA--GG-UGGGaa------GCGGCG-GGu -5'
26928 5' -64.2 NC_005809.1 + 20323 0.66 0.269337
Target:  5'- gGCCGGCGaaUACgCCaUCGCgGCCg- -3'
miRNA:   3'- gCGGCCGCagGUG-GGaAGCGgCGGgu -5'
26928 5' -64.2 NC_005809.1 + 29241 0.69 0.16648
Target:  5'- uCGgCGGCGaCCugCCgaaagccuaCGCCGCCUAc -3'
miRNA:   3'- -GCgGCCGCaGGugGGaa-------GCGGCGGGU- -5'
26928 5' -64.2 NC_005809.1 + 14187 0.68 0.183278
Target:  5'- cCGCCGGCGUCgaacuggaacaccuCGCcaaggaaaccauCCgcgCGCUGCCCGa -3'
miRNA:   3'- -GCGGCCGCAG--------------GUG------------GGaa-GCGGCGGGU- -5'
26928 5' -64.2 NC_005809.1 + 6736 0.67 0.215331
Target:  5'- aGCaCGGCGUCgGCCU--UGgCGCCCc -3'
miRNA:   3'- gCG-GCCGCAGgUGGGaaGCgGCGGGu -5'
26928 5' -64.2 NC_005809.1 + 19153 0.67 0.220841
Target:  5'- gGCCGGCGUCgCACugaCCggCG-CGCUCAu -3'
miRNA:   3'- gCGGCCGCAG-GUG---GGaaGCgGCGGGU- -5'
26928 5' -64.2 NC_005809.1 + 40153 0.67 0.220841
Target:  5'- gGCCGGCcugCUGCCgUacaccuacgcUUGCCGCCCu -3'
miRNA:   3'- gCGGCCGca-GGUGGgA----------AGCGGCGGGu -5'
26928 5' -64.2 NC_005809.1 + 6326 0.66 0.24409
Target:  5'- aCGCgGcGCGuUCCGCCCcagccaaagCGCCcgGCCCGa -3'
miRNA:   3'- -GCGgC-CGC-AGGUGGGaa-------GCGG--CGGGU- -5'
26928 5' -64.2 NC_005809.1 + 33092 0.66 0.23222
Target:  5'- gGCUGGCaugaCGCCCgaagaaUUCGCUGCCUAu -3'
miRNA:   3'- gCGGCCGcag-GUGGG------AAGCGGCGGGU- -5'
26928 5' -64.2 NC_005809.1 + 26150 0.67 0.220841
Target:  5'- cCGCCGGCGaUUACCC--CGCgGCCg- -3'
miRNA:   3'- -GCGGCCGCaGGUGGGaaGCGgCGGgu -5'
26928 5' -64.2 NC_005809.1 + 16792 0.7 0.124432
Target:  5'- gCGCCGcGCGcaucgcggCCAUCgUUgcCGCCGCCCAg -3'
miRNA:   3'- -GCGGC-CGCa-------GGUGGgAA--GCGGCGGGU- -5'
26928 5' -64.2 NC_005809.1 + 41897 0.66 0.23222
Target:  5'- gGCCGGCG-CCGCCgUagGC-GCCUg -3'
miRNA:   3'- gCGGCCGCaGGUGGgAagCGgCGGGu -5'
26928 5' -64.2 NC_005809.1 + 8184 0.7 0.13481
Target:  5'- gCGCUGGCGUCCuGCCCgUUCGUCaGCgaCAu -3'
miRNA:   3'- -GCGGCCGCAGG-UGGG-AAGCGG-CGg-GU- -5'
26928 5' -64.2 NC_005809.1 + 27169 0.67 0.220841
Target:  5'- uGCauCGGuCGUCCGgcaUCUUCGCCGgCCCGc -3'
miRNA:   3'- gCG--GCC-GCAGGUg--GGAAGCGGC-GGGU- -5'
26928 5' -64.2 NC_005809.1 + 33351 0.66 0.238093
Target:  5'- cCGCCgGGCGcgCCGCagaaCgugCGCCGCgCCGc -3'
miRNA:   3'- -GCGG-CCGCa-GGUGg---Gaa-GCGGCG-GGU- -5'
26928 5' -64.2 NC_005809.1 + 13250 0.66 0.250211
Target:  5'- gGCCGGCGaCCGCCa----CCGCCUu -3'
miRNA:   3'- gCGGCCGCaGGUGGgaagcGGCGGGu -5'
26928 5' -64.2 NC_005809.1 + 8625 0.69 0.153888
Target:  5'- gGCCGGUa--CGCCCUUCGgaaaCGCCCc -3'
miRNA:   3'- gCGGCCGcagGUGGGAAGCg---GCGGGu -5'
26928 5' -64.2 NC_005809.1 + 31131 0.68 0.184703
Target:  5'- uGCCGGUGUCgCGCCUUaUCGgCGaCCUg -3'
miRNA:   3'- gCGGCCGCAG-GUGGGA-AGCgGC-GGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.