Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26932 | 5' | -55 | NC_005809.1 | + | 41730 | 0.68 | 0.54737 |
Target: 5'- aUACAGgccACGGUcgGCUCGCUGUCucugcgcgcgcucaaGCCCa -3' miRNA: 3'- -GUGUU---UGUCAa-CGGGCGACAG---------------CGGGg -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 39562 | 0.65 | 0.677153 |
Target: 5'- gACGAGCAGcuaUGaCCCGCcGcgccuUCGUCCCc -3' miRNA: 3'- gUGUUUGUCa--AC-GGGCGaC-----AGCGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 35374 | 0.67 | 0.598493 |
Target: 5'- aCGCAguccGAUGGcaaGCCCaGC-GUCGCCCCc -3' miRNA: 3'- -GUGU----UUGUCaa-CGGG-CGaCAGCGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 34265 | 0.68 | 0.521231 |
Target: 5'- -cCGAGCAGcgcGCaCCGCUGgcugcacUGCCCCg -3' miRNA: 3'- guGUUUGUCaa-CG-GGCGACa------GCGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 33558 | 0.76 | 0.179227 |
Target: 5'- gACGAACuGGUgcgccGCCUGCUGgaagCGCCCCc -3' miRNA: 3'- gUGUUUG-UCAa----CGGGCGACa---GCGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 32859 | 0.75 | 0.217062 |
Target: 5'- cCGCAGACGGUcgGCgCCGagauUGUCGCgCCCg -3' miRNA: 3'- -GUGUUUGUCAa-CG-GGCg---ACAGCG-GGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 32844 | 0.71 | 0.354502 |
Target: 5'- cCACGAGCAGUUcGCCCGCg---GCUUCg -3' miRNA: 3'- -GUGUUUGUCAA-CGGGCGacagCGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 31608 | 0.69 | 0.458257 |
Target: 5'- aACAGguggccGCAGUgucCCCgGCUGUCGCCgCg -3' miRNA: 3'- gUGUU------UGUCAac-GGG-CGACAGCGGgG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 31028 | 0.69 | 0.489271 |
Target: 5'- gGCGGGCAGUccuaucaggaUGCCCGCUcgcaggGCCUCa -3' miRNA: 3'- gUGUUUGUCA----------ACGGGCGAcag---CGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 28889 | 0.66 | 0.66596 |
Target: 5'- gCugGcgUAGUUGCUgGCcGUCGCCgaCCa -3' miRNA: 3'- -GugUuuGUCAACGGgCGaCAGCGG--GG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 28077 | 0.66 | 0.66596 |
Target: 5'- aGCGGGCAGgUGgCCGCggcGUCGUauUCCg -3' miRNA: 3'- gUGUUUGUCaACgGGCGa--CAGCG--GGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 27150 | 0.67 | 0.609721 |
Target: 5'- aACAAGCuguGGUUGCgCGUgcaucgGUCGUCCg -3' miRNA: 3'- gUGUUUG---UCAACGgGCGa-----CAGCGGGg -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 18476 | 0.68 | 0.499826 |
Target: 5'- gCGCAuguAGCGGggUGCCCGUgccccgcgcgGUCGCCgCu -3' miRNA: 3'- -GUGU---UUGUCa-ACGGGCGa---------CAGCGGgG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 17834 | 0.67 | 0.585059 |
Target: 5'- -uCGGGCGGguugaUGCCCGCcaccguggccucGUCGCCCa -3' miRNA: 3'- guGUUUGUCa----ACGGGCGa-----------CAGCGGGg -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 17563 | 0.71 | 0.363225 |
Target: 5'- -uCGGACGGcaaCCCGCUGUCgucgGCCCCc -3' miRNA: 3'- guGUUUGUCaacGGGCGACAG----CGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 16788 | 0.68 | 0.542983 |
Target: 5'- gGCGAuggucgcCAGUUGCCaGUUgGUCGCgCCCa -3' miRNA: 3'- gUGUUu------GUCAACGGgCGA-CAGCG-GGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 15562 | 0.66 | 0.620969 |
Target: 5'- uCACGGuACAuauccGCgCCGCUGUaGCCCCa -3' miRNA: 3'- -GUGUU-UGUcaa--CG-GGCGACAgCGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 15267 | 1.12 | 0.000433 |
Target: 5'- gCACAAACAGUUGCCCGCUGUCGCCCCa -3' miRNA: 3'- -GUGUUUGUCAACGGGCGACAGCGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 13167 | 0.67 | 0.587295 |
Target: 5'- -uCGGcCAGUgucgGCCgCGCUGggCGCCCUu -3' miRNA: 3'- guGUUuGUCAa---CGG-GCGACa-GCGGGG- -5' |
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26932 | 5' | -55 | NC_005809.1 | + | 11135 | 0.72 | 0.297641 |
Target: 5'- uGCGAGCAGUucgGCCUGCUGcugggcCGCCUg -3' miRNA: 3'- gUGUUUGUCAa--CGGGCGACa-----GCGGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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