miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26939 3' -59.1 NC_005809.1 + 18094 1.09 0.000366
Target:  5'- gCCGGCGCGAACCAGGACGCCUUCGCGc -3'
miRNA:   3'- -GGCCGCGCUUGGUCCUGCGGAAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 30637 0.8 0.056458
Target:  5'- gCCGGCGCGAAUgAGGGCGCagaccaaUUCGuCGg -3'
miRNA:   3'- -GGCCGCGCUUGgUCCUGCGg------AAGC-GC- -5'
26939 3' -59.1 NC_005809.1 + 36119 0.78 0.08153
Target:  5'- uCCuGCGCGA--CGGcGACGCCUUCGCGg -3'
miRNA:   3'- -GGcCGCGCUugGUC-CUGCGGAAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 34813 0.77 0.088676
Target:  5'- -aGGCGCGAGCCuGGAUuCCUUCGUc -3'
miRNA:   3'- ggCCGCGCUUGGuCCUGcGGAAGCGc -5'
26939 3' -59.1 NC_005809.1 + 38852 0.77 0.093767
Target:  5'- aCCGGCGUGAACgGcacGGGCGCCacgagCGCGu -3'
miRNA:   3'- -GGCCGCGCUUGgU---CCUGCGGaa---GCGC- -5'
26939 3' -59.1 NC_005809.1 + 41506 0.75 0.134186
Target:  5'- aCCGcGCGCGuuaCuGGACGCCgguUCGCGg -3'
miRNA:   3'- -GGC-CGCGCuugGuCCUGCGGa--AGCGC- -5'
26939 3' -59.1 NC_005809.1 + 7756 0.74 0.137886
Target:  5'- uUGGCGaCGAAggaauCCAGGcucGCGCCUUCGCc -3'
miRNA:   3'- gGCCGC-GCUU-----GGUCC---UGCGGAAGCGc -5'
26939 3' -59.1 NC_005809.1 + 4377 0.74 0.141679
Target:  5'- gCGGaUGCGcAGCCAGG-CGCCgUCGCGc -3'
miRNA:   3'- gGCC-GCGC-UUGGUCCuGCGGaAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 25197 0.73 0.166507
Target:  5'- gUCGGCGCGAugCAGGcAUaCCUgUCGCa -3'
miRNA:   3'- -GGCCGCGCUugGUCC-UGcGGA-AGCGc -5'
26939 3' -59.1 NC_005809.1 + 1716 0.72 0.195168
Target:  5'- gCCGGCGUGccGGCgAGGGCGUCcaaguccUCGCGg -3'
miRNA:   3'- -GGCCGCGC--UUGgUCCUGCGGa------AGCGC- -5'
26939 3' -59.1 NC_005809.1 + 26278 0.72 0.199823
Target:  5'- cCCGuGCGCGAcgacgaccggguaGCCuuccGGGugGCCgcgCGCGa -3'
miRNA:   3'- -GGC-CGCGCU-------------UGG----UCCugCGGaa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 31025 0.72 0.205642
Target:  5'- aCCGGCGgGcaguccuAUCAGGAUGCCcgcUCGCa -3'
miRNA:   3'- -GGCCGCgCu------UGGUCCUGCGGa--AGCGc -5'
26939 3' -59.1 NC_005809.1 + 8447 0.71 0.222262
Target:  5'- aUCGGCGCGAugUcggcgucgAGGugGCCUgcgaugcCGCa -3'
miRNA:   3'- -GGCCGCGCUugG--------UCCugCGGAa------GCGc -5'
26939 3' -59.1 NC_005809.1 + 37190 0.71 0.228051
Target:  5'- gCGGCGCGcACCAGuGACauaacCCUgggCGCGg -3'
miRNA:   3'- gGCCGCGCuUGGUC-CUGc----GGAa--GCGC- -5'
26939 3' -59.1 NC_005809.1 + 7771 0.71 0.228051
Target:  5'- aCCGGCGCGAucugcGCCGGcGuccAC-CCUUCGCc -3'
miRNA:   3'- -GGCCGCGCU-----UGGUC-C---UGcGGAAGCGc -5'
26939 3' -59.1 NC_005809.1 + 36225 0.71 0.233967
Target:  5'- cCCGGCcuuCGGGCCGGG-CGCUUUgGCu -3'
miRNA:   3'- -GGCCGc--GCUUGGUCCuGCGGAAgCGc -5'
26939 3' -59.1 NC_005809.1 + 1884 0.71 0.240012
Target:  5'- gCCGGCGCuGGCCGGGugGgCgaacagcaGCGg -3'
miRNA:   3'- -GGCCGCGcUUGGUCCugCgGaag-----CGC- -5'
26939 3' -59.1 NC_005809.1 + 35393 0.71 0.240012
Target:  5'- cCCGGCuGCG--UCAGGGCGUCagCGCGu -3'
miRNA:   3'- -GGCCG-CGCuuGGUCCUGCGGaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 35031 0.71 0.248693
Target:  5'- cCCGGcCGCGAGCCagcGugcggaagaacacucGGACGCCgaaagCGCGc -3'
miRNA:   3'- -GGCC-GCGCUUGG---U---------------CCUGCGGaa---GCGC- -5'
26939 3' -59.1 NC_005809.1 + 10465 0.71 0.252492
Target:  5'- gUCGGCaGCG-GCCAGGGCGUUgagcaaCGCGg -3'
miRNA:   3'- -GGCCG-CGCuUGGUCCUGCGGaa----GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.