miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26939 3' -59.1 NC_005809.1 + 454 0.67 0.434921
Target:  5'- gCuGCGCG-GCCAgcuugcGGGCGCUgUCGCGg -3'
miRNA:   3'- gGcCGCGCuUGGU------CCUGCGGaAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 690 0.67 0.398113
Target:  5'- gCGGCGCcGGCCGGGcCGCCcaagauacCGCc -3'
miRNA:   3'- gGCCGCGcUUGGUCCuGCGGaa------GCGc -5'
26939 3' -59.1 NC_005809.1 + 1716 0.72 0.195168
Target:  5'- gCCGGCGUGccGGCgAGGGCGUCcaaguccUCGCGg -3'
miRNA:   3'- -GGCCGCGC--UUGgUCCUGCGGa------AGCGC- -5'
26939 3' -59.1 NC_005809.1 + 1750 0.67 0.416269
Target:  5'- aCCGG-GCGGucaugGCCGGccuGCGCCUggCGCGu -3'
miRNA:   3'- -GGCCgCGCU-----UGGUCc--UGCGGAa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 1884 0.71 0.240012
Target:  5'- gCCGGCGCuGGCCGGGugGgCgaacagcaGCGg -3'
miRNA:   3'- -GGCCGCGcUUGGUCCugCgGaag-----CGC- -5'
26939 3' -59.1 NC_005809.1 + 3254 0.67 0.425534
Target:  5'- cCCGGCGgGAuucagcuuccgcGCCAGauagucGGCccguGCCUUUGCGa -3'
miRNA:   3'- -GGCCGCgCU------------UGGUC------CUG----CGGAAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 3498 0.66 0.493613
Target:  5'- cCCGGCGUu--CCAGuACGCag-CGCGa -3'
miRNA:   3'- -GGCCGCGcuuGGUCcUGCGgaaGCGC- -5'
26939 3' -59.1 NC_005809.1 + 3852 0.69 0.338717
Target:  5'- cUCGGCGaaguuguACCAGG-CGCCgUCGCu -3'
miRNA:   3'- -GGCCGCgcu----UGGUCCuGCGGaAGCGc -5'
26939 3' -59.1 NC_005809.1 + 4377 0.74 0.141679
Target:  5'- gCGGaUGCGcAGCCAGG-CGCCgUCGCGc -3'
miRNA:   3'- gGCC-GCGC-UUGGUCCuGCGGaAGCGC- -5'
26939 3' -59.1 NC_005809.1 + 4671 0.69 0.330775
Target:  5'- uUGGCGgGcACCAGcGCGCCggauagCGCGg -3'
miRNA:   3'- gGCCGCgCuUGGUCcUGCGGaa----GCGC- -5'
26939 3' -59.1 NC_005809.1 + 5442 0.68 0.38396
Target:  5'- gCGGCGUGGGCgAGGucgguaucgaccaucACGCCgcggUCGUu -3'
miRNA:   3'- gGCCGCGCUUGgUCC---------------UGCGGa---AGCGc -5'
26939 3' -59.1 NC_005809.1 + 5636 0.66 0.463782
Target:  5'- gCGGCGC-AGCUugcuGGugGCUggaCGCGg -3'
miRNA:   3'- gGCCGCGcUUGGu---CCugCGGaa-GCGC- -5'
26939 3' -59.1 NC_005809.1 + 6355 0.67 0.403507
Target:  5'- cCCGGCcCGAagGCCGGGGCGCUggguuacaccaggUCGg- -3'
miRNA:   3'- -GGCCGcGCU--UGGUCCUGCGGa------------AGCgc -5'
26939 3' -59.1 NC_005809.1 + 7057 0.67 0.441563
Target:  5'- aCCGGgGCG-GCCAGGuacuucaugACGCCgcggccuacccacggCGCGc -3'
miRNA:   3'- -GGCCgCGCuUGGUCC---------UGCGGaa-------------GCGC- -5'
26939 3' -59.1 NC_005809.1 + 7247 0.66 0.463782
Target:  5'- aCUGGCGCGGGCCGauguCGCCggccUUGUGc -3'
miRNA:   3'- -GGCCGCGCUUGGUccu-GCGGa---AGCGC- -5'
26939 3' -59.1 NC_005809.1 + 7756 0.74 0.137886
Target:  5'- uUGGCGaCGAAggaauCCAGGcucGCGCCUUCGCc -3'
miRNA:   3'- gGCCGC-GCUU-----GGUCC---UGCGGAAGCGc -5'
26939 3' -59.1 NC_005809.1 + 7771 0.71 0.228051
Target:  5'- aCCGGCGCGAucugcGCCGGcGuccAC-CCUUCGCc -3'
miRNA:   3'- -GGCCGCGCU-----UGGUC-C---UGcGGAAGCGc -5'
26939 3' -59.1 NC_005809.1 + 7831 0.66 0.473624
Target:  5'- -aGGCGCGGcugcacgaugACCAGG-CGCacgCGCu -3'
miRNA:   3'- ggCCGCGCU----------UGGUCCuGCGgaaGCGc -5'
26939 3' -59.1 NC_005809.1 + 7936 0.68 0.380474
Target:  5'- aCCGGCGCGAggauuuccgacaGCUugcccGugGCCUcggCGCGc -3'
miRNA:   3'- -GGCCGCGCU------------UGGuc---CugCGGAa--GCGC- -5'
26939 3' -59.1 NC_005809.1 + 8447 0.71 0.222262
Target:  5'- aUCGGCGCGAugUcggcgucgAGGugGCCUgcgaugcCGCa -3'
miRNA:   3'- -GGCCGCGCUugG--------UCCugCGGAa------GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.