miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26947 5' -68 NC_005809.1 + 4036 0.66 0.165298
Target:  5'- uGCCGCGCGGGucgagcGCAgcCGGGCGgaacuugauguCCCacagGCUg -3'
miRNA:   3'- -UGGCGCGCCC------CGU--GCCCGU-----------GGGg---CGA- -5'
26947 5' -68 NC_005809.1 + 12545 0.66 0.165298
Target:  5'- gUgGUGUGGGGCACcaaGGGCGCggCCGUg -3'
miRNA:   3'- uGgCGCGCCCCGUG---CCCGUGg-GGCGa -5'
26947 5' -68 NC_005809.1 + 37436 0.66 0.161103
Target:  5'- gGCCGCcuGCGcGGCACGuugcaguucaacGGCGCCagCCGCa -3'
miRNA:   3'- -UGGCG--CGCcCCGUGC------------CCGUGG--GGCGa -5'
26947 5' -68 NC_005809.1 + 18062 0.66 0.161103
Target:  5'- uACCgGCGCGGGGUGCGuGCuggGCCgCCGa- -3'
miRNA:   3'- -UGG-CGCGCCCCGUGCcCG---UGG-GGCga -5'
26947 5' -68 NC_005809.1 + 34466 0.66 0.153001
Target:  5'- gGCCGCGCGGuGCA-GGGCcUCaaaCGCUu -3'
miRNA:   3'- -UGGCGCGCCcCGUgCCCGuGGg--GCGA- -5'
26947 5' -68 NC_005809.1 + 24867 0.66 0.153001
Target:  5'- uGCCGCGauGGGCAUuucccggcccgaGuGGCGCUUCGCc -3'
miRNA:   3'- -UGGCGCgcCCCGUG------------C-CCGUGGGGCGa -5'
26947 5' -68 NC_005809.1 + 18473 0.66 0.14154
Target:  5'- cGCgCGCauguaGCGGGGUGCccGUGCCCCGCg -3'
miRNA:   3'- -UG-GCG-----CGCCCCGUGccCGUGGGGCGa -5'
26947 5' -68 NC_005809.1 + 8293 0.66 0.14154
Target:  5'- cGCUGC-CGGGGCagugcagccaGCGGuGCGCgCUGCUc -3'
miRNA:   3'- -UGGCGcGCCCCG----------UGCC-CGUGgGGCGA- -5'
26947 5' -68 NC_005809.1 + 23712 0.66 0.14154
Target:  5'- cCCGaaCGuGGGCAUGGGcCGCCCgGCc -3'
miRNA:   3'- uGGCgcGC-CCCGUGCCC-GUGGGgCGa -5'
26947 5' -68 NC_005809.1 + 8120 0.67 0.135754
Target:  5'- cACCGCGCGgccggcguugguuguGGGCguGCGGGUGucggcgcugcguCCCUGCg -3'
miRNA:   3'- -UGGCGCGC---------------CCCG--UGCCCGU------------GGGGCGa -5'
26947 5' -68 NC_005809.1 + 3740 0.67 0.134342
Target:  5'- cGCCG-GUGguGGGCACGucGGUGCCgCCGCUg -3'
miRNA:   3'- -UGGCgCGC--CCCGUGC--CCGUGG-GGCGA- -5'
26947 5' -68 NC_005809.1 + 36236 0.67 0.13087
Target:  5'- gGCCGgGCGcuuuGGCugGGGCggaacGCgCCGCg -3'
miRNA:   3'- -UGGCgCGCc---CCGugCCCG-----UGgGGCGa -5'
26947 5' -68 NC_005809.1 + 39487 0.67 0.13087
Target:  5'- uGCCGCGUGucgaaGGGCAUGGGUgcgGCUCgggCGCUu -3'
miRNA:   3'- -UGGCGCGC-----CCCGUGCCCG---UGGG---GCGA- -5'
26947 5' -68 NC_005809.1 + 20061 0.67 0.13087
Target:  5'- uGCuCGCuGCGGGGaugaugGCGGGCAUgaccagcccagCCCGCc -3'
miRNA:   3'- -UG-GCG-CGCCCCg-----UGCCCGUG-----------GGGCGa -5'
26947 5' -68 NC_005809.1 + 26048 0.67 0.127481
Target:  5'- cCCGCGCGgcGGGCGCGcuccauGCGCUCgGCg -3'
miRNA:   3'- uGGCGCGC--CCCGUGCc-----CGUGGGgCGa -5'
26947 5' -68 NC_005809.1 + 14738 0.67 0.124174
Target:  5'- aGCgGCGCGGccGGCgccaccGCGGGCAgCgCGCg -3'
miRNA:   3'- -UGgCGCGCC--CCG------UGCCCGUgGgGCGa -5'
26947 5' -68 NC_005809.1 + 6161 0.67 0.117797
Target:  5'- --gGgGUGaGGCACGGGCACCCUuaGCg -3'
miRNA:   3'- uggCgCGCcCCGUGCCCGUGGGG--CGa -5'
26947 5' -68 NC_005809.1 + 453 0.67 0.117797
Target:  5'- uGCUGCGCGGccaGCuuGCGGGCGCUgUCGCg -3'
miRNA:   3'- -UGGCGCGCCc--CG--UGCCCGUGG-GGCGa -5'
26947 5' -68 NC_005809.1 + 15149 0.68 0.114724
Target:  5'- gGCCGC-C-GGGCGCGGuGCGCCaggCGCg -3'
miRNA:   3'- -UGGCGcGcCCCGUGCC-CGUGGg--GCGa -5'
26947 5' -68 NC_005809.1 + 15833 0.68 0.114724
Target:  5'- aAUCGCaGCGGGcGCGCuGGCggugGCCCgGCUu -3'
miRNA:   3'- -UGGCG-CGCCC-CGUGcCCG----UGGGgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.