miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2695 5' -54.2 NC_001491.2 + 109031 1.15 0.001536
Target:  5'- aGCGCUAGCCCUAGCGUUAGCGCUAGCg -3'
miRNA:   3'- -CGCGAUCGGGAUCGCAAUCGCGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 109066 1.06 0.005995
Target:  5'- uUGCUAGCCCUAGCGUUAGCGCUAGCc -3'
miRNA:   3'- cGCGAUCGGGAUCGCAAUCGCGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 77691 0.74 0.559691
Target:  5'- cGCGCUAacuGgCCUAGCGcuaaUGGCGCguggGGCu -3'
miRNA:   3'- -CGCGAU---CgGGAUCGCa---AUCGCGa---UCG- -5'
2695 5' -54.2 NC_001491.2 + 130624 0.72 0.659562
Target:  5'- uGCGCgaccucugugguGCCCUgcguguuuuugAGCGUUGGCGgUGGUg -3'
miRNA:   3'- -CGCGau----------CGGGA-----------UCGCAAUCGCgAUCG- -5'
2695 5' -54.2 NC_001491.2 + 28883 0.72 0.68449
Target:  5'- uGCGCUcGCUC-AGCGUUGcaaacCGCUGGCu -3'
miRNA:   3'- -CGCGAuCGGGaUCGCAAUc----GCGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 82657 0.71 0.735435
Target:  5'- cGCGCUGGgCCUgGGCGUUuGGgGUgagAGCc -3'
miRNA:   3'- -CGCGAUCgGGA-UCGCAA-UCgCGa--UCG- -5'
2695 5' -54.2 NC_001491.2 + 97686 0.71 0.751301
Target:  5'- aGCGUgcagagucUGGCCCUGGCGagAGacgauccuguggaGCUAGCc -3'
miRNA:   3'- -CGCG--------AUCGGGAUCGCaaUCg------------CGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 79344 0.7 0.764956
Target:  5'- aGCGCcuccgcGGUCC-AGCGggGucGCGCUGGCa -3'
miRNA:   3'- -CGCGa-----UCGGGaUCGCaaU--CGCGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 144589 0.7 0.774563
Target:  5'- uGCGCUGGCU--GGCcaUGGCguGCUAGCu -3'
miRNA:   3'- -CGCGAUCGGgaUCGcaAUCG--CGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 140649 0.7 0.802551
Target:  5'- gGUGCUccgAGCCCcGGCuggGggAGCGgUAGCg -3'
miRNA:   3'- -CGCGA---UCGGGaUCG---CaaUCGCgAUCG- -5'
2695 5' -54.2 NC_001491.2 + 122253 0.7 0.802551
Target:  5'- aCGCUcaCCCUuggGGgGUUGGCGCUuGCg -3'
miRNA:   3'- cGCGAucGGGA---UCgCAAUCGCGAuCG- -5'
2695 5' -54.2 NC_001491.2 + 114938 0.69 0.81157
Target:  5'- uGCGCUGGCCC---CGggAGCGCcaccucAGCc -3'
miRNA:   3'- -CGCGAUCGGGaucGCaaUCGCGa-----UCG- -5'
2695 5' -54.2 NC_001491.2 + 117611 0.69 0.829091
Target:  5'- aGCGUccgaaaucGGCUCUGGCGggAGCGUcgaAGCg -3'
miRNA:   3'- -CGCGa-------UCGGGAUCGCaaUCGCGa--UCG- -5'
2695 5' -54.2 NC_001491.2 + 106202 0.69 0.837576
Target:  5'- aCGCUcggGGCCCUGGCcaUGGCaGCacAGCg -3'
miRNA:   3'- cGCGA---UCGGGAUCGcaAUCG-CGa-UCG- -5'
2695 5' -54.2 NC_001491.2 + 148148 0.69 0.853952
Target:  5'- -aGCUuGCgCCUGGCGgagcccaGGCGCaGGCa -3'
miRNA:   3'- cgCGAuCG-GGAUCGCaa-----UCGCGaUCG- -5'
2695 5' -54.2 NC_001491.2 + 1549 0.68 0.869491
Target:  5'- gGCGCacAGCCC-AGCGau-GCGC-GGCg -3'
miRNA:   3'- -CGCGa-UCGGGaUCGCaauCGCGaUCG- -5'
2695 5' -54.2 NC_001491.2 + 110781 0.68 0.87693
Target:  5'- cCGCgGGCCCcAGuCGccugGGUGCUGGCc -3'
miRNA:   3'- cGCGaUCGGGaUC-GCaa--UCGCGAUCG- -5'
2695 5' -54.2 NC_001491.2 + 65769 0.68 0.89112
Target:  5'- aGCGCUcaccgcGCCCaGGCG--AGCGCagAGCc -3'
miRNA:   3'- -CGCGAu-----CGGGaUCGCaaUCGCGa-UCG- -5'
2695 5' -54.2 NC_001491.2 + 146889 0.67 0.904361
Target:  5'- cGgGCccgGGCCCccucGGCGUugUAGCGCaccAGCg -3'
miRNA:   3'- -CgCGa--UCGGGa---UCGCA--AUCGCGa--UCG- -5'
2695 5' -54.2 NC_001491.2 + 13978 0.67 0.904361
Target:  5'- aGCGuCUGGCCCUccggaaaacccAGCucgccuugUAGCcGCUGGUa -3'
miRNA:   3'- -CGC-GAUCGGGA-----------UCGca------AUCG-CGAUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.