Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2695 | 5' | -54.2 | NC_001491.2 | + | 1549 | 0.68 | 0.869491 |
Target: 5'- gGCGCacAGCCC-AGCGau-GCGC-GGCg -3' miRNA: 3'- -CGCGa-UCGGGaUCGCaauCGCGaUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 13930 | 0.66 | 0.95174 |
Target: 5'- aGCGC--GCCggggCUGGCGgccuugGGCGgUGGCa -3' miRNA: 3'- -CGCGauCGG----GAUCGCaa----UCGCgAUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 13978 | 0.67 | 0.904361 |
Target: 5'- aGCGuCUGGCCCUccggaaaacccAGCucgccuugUAGCcGCUGGUa -3' miRNA: 3'- -CGC-GAUCGGGA-----------UCGca------AUCG-CGAUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 16644 | 0.66 | 0.947463 |
Target: 5'- cGUGUccaugUAGCgCCUGuGUGUUGGaccaaGCUAGCc -3' miRNA: 3'- -CGCG-----AUCG-GGAU-CGCAAUCg----CGAUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 24058 | 0.67 | 0.916627 |
Target: 5'- gGCGCUGGCCacuCUAGUGgcagccAGUGuCUGGg -3' miRNA: 3'- -CGCGAUCGG---GAUCGCaa----UCGC-GAUCg -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 28883 | 0.72 | 0.68449 |
Target: 5'- uGCGCUcGCUC-AGCGUUGcaaacCGCUGGCu -3' miRNA: 3'- -CGCGAuCGGGaUCGCAAUc----GCGAUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 35970 | 0.67 | 0.922388 |
Target: 5'- gGCcCUGGCCagcuGCGUgUGGCGUgugAGCa -3' miRNA: 3'- -CGcGAUCGGgau-CGCA-AUCGCGa--UCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 43309 | 0.66 | 0.95174 |
Target: 5'- aGUGCUGGUCCcGGUagUGGUGUaUAGCu -3' miRNA: 3'- -CGCGAUCGGGaUCGcaAUCGCG-AUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 50205 | 0.66 | 0.947463 |
Target: 5'- aGCGCgAGCC--AGUGUUcgcGCGUUAGUa -3' miRNA: 3'- -CGCGaUCGGgaUCGCAAu--CGCGAUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 65769 | 0.68 | 0.89112 |
Target: 5'- aGCGCUcaccgcGCCCaGGCG--AGCGCagAGCc -3' miRNA: 3'- -CGCGAu-----CGGGaUCGCaaUCGCGa-UCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 70886 | 0.67 | 0.916627 |
Target: 5'- uGCGC-AGCUUUAGCaucAGCGCgucaAGCg -3' miRNA: 3'- -CGCGaUCGGGAUCGcaaUCGCGa---UCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 77691 | 0.74 | 0.559691 |
Target: 5'- cGCGCUAacuGgCCUAGCGcuaaUGGCGCguggGGCu -3' miRNA: 3'- -CGCGAU---CgGGAUCGCa---AUCGCGa---UCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 79344 | 0.7 | 0.764956 |
Target: 5'- aGCGCcuccgcGGUCC-AGCGggGucGCGCUGGCa -3' miRNA: 3'- -CGCGa-----UCGGGaUCGCaaU--CGCGAUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 82657 | 0.71 | 0.735435 |
Target: 5'- cGCGCUGGgCCUgGGCGUUuGGgGUgagAGCc -3' miRNA: 3'- -CGCGAUCgGGA-UCGCAA-UCgCGa--UCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 84697 | 0.66 | 0.95174 |
Target: 5'- uGgGCUAGCUCUauGGCGgu--CGCUaAGCu -3' miRNA: 3'- -CgCGAUCGGGA--UCGCaaucGCGA-UCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 85046 | 0.67 | 0.916037 |
Target: 5'- cGCGCUuggaaucGGCCCcgUAGCG--AGUGCcugggGGCa -3' miRNA: 3'- -CGCGA-------UCGGG--AUCGCaaUCGCGa----UCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 88173 | 0.66 | 0.942942 |
Target: 5'- gGUGC---CCCUgauAGCucUGGCGCUAGCg -3' miRNA: 3'- -CGCGaucGGGA---UCGcaAUCGCGAUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 91691 | 0.66 | 0.95174 |
Target: 5'- uCGCUAGCac-GGCGUcccuGaCGCUGGCc -3' miRNA: 3'- cGCGAUCGggaUCGCAau--C-GCGAUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 97686 | 0.71 | 0.751301 |
Target: 5'- aGCGUgcagagucUGGCCCUGGCGagAGacgauccuguggaGCUAGCc -3' miRNA: 3'- -CGCG--------AUCGGGAUCGCaaUCg------------CGAUCG- -5' |
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2695 | 5' | -54.2 | NC_001491.2 | + | 106202 | 0.69 | 0.837576 |
Target: 5'- aCGCUcggGGCCCUGGCcaUGGCaGCacAGCg -3' miRNA: 3'- cGCGA---UCGGGAUCGcaAUCG-CGa-UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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