miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2696 5' -50.3 NC_001491.2 + 56020 0.66 0.994864
Target:  5'- -uACCACcagGUACagcGCGGugGUCUCCg -3'
miRNA:   3'- cuUGGUGa--CGUGga-CGUCuuUAGAGG- -5'
2696 5' -50.3 NC_001491.2 + 99934 0.66 0.994864
Target:  5'- --uCCAgaUGUACCUGgAGAAcugCUCCa -3'
miRNA:   3'- cuuGGUg-ACGUGGACgUCUUua-GAGG- -5'
2696 5' -50.3 NC_001491.2 + 2375 0.66 0.994022
Target:  5'- uGGCCGCUGUACCgaUGCAuacgcuGAAAg-UCCa -3'
miRNA:   3'- cUUGGUGACGUGG--ACGU------CUUUagAGG- -5'
2696 5' -50.3 NC_001491.2 + 41493 0.66 0.993072
Target:  5'- uGGACC---GCGCCUGCuGGAGccaCUCCa -3'
miRNA:   3'- -CUUGGugaCGUGGACGuCUUUa--GAGG- -5'
2696 5' -50.3 NC_001491.2 + 123288 0.66 0.990813
Target:  5'- cGGCCGCUG-ACUcgGCGuGGGUCUCCa -3'
miRNA:   3'- cUUGGUGACgUGGa-CGUcUUUAGAGG- -5'
2696 5' -50.3 NC_001491.2 + 141330 0.67 0.988011
Target:  5'- --cCCGCUGCGCgccacgCUGCGGGcacuGAaCUCCg -3'
miRNA:   3'- cuuGGUGACGUG------GACGUCU----UUaGAGG- -5'
2696 5' -50.3 NC_001491.2 + 22767 0.67 0.984589
Target:  5'- aAACCACaauCACCUGCAccaaGAGUCUCa -3'
miRNA:   3'- cUUGGUGac-GUGGACGUc---UUUAGAGg -5'
2696 5' -50.3 NC_001491.2 + 139992 0.67 0.984589
Target:  5'- cGGAcCCGCUGCGCCgcgccgugggGCGGuaccucguGGAUCUCg -3'
miRNA:   3'- -CUU-GGUGACGUGGa---------CGUC--------UUUAGAGg -5'
2696 5' -50.3 NC_001491.2 + 18592 0.67 0.982621
Target:  5'- -cGCCGCUGgACUcGCGGAGGUagcgCCa -3'
miRNA:   3'- cuUGGUGACgUGGaCGUCUUUAga--GG- -5'
2696 5' -50.3 NC_001491.2 + 137615 0.67 0.982621
Target:  5'- -cGCCGCgGCAgcggccgccCCgggGCGGGAAUUUCCc -3'
miRNA:   3'- cuUGGUGaCGU---------GGa--CGUCUUUAGAGG- -5'
2696 5' -50.3 NC_001491.2 + 147600 0.68 0.977881
Target:  5'- --gUCGCUGgGCC-GCGGAguguggcAGUCUCCg -3'
miRNA:   3'- cuuGGUGACgUGGaCGUCU-------UUAGAGG- -5'
2696 5' -50.3 NC_001491.2 + 85533 0.68 0.975582
Target:  5'- gGGGCCGCUGUuaacaaAUCUGCcAGAAucugggggCUCCa -3'
miRNA:   3'- -CUUGGUGACG------UGGACG-UCUUua------GAGG- -5'
2696 5' -50.3 NC_001491.2 + 110857 0.69 0.959556
Target:  5'- cGGCCuagaUGCAgCCUGCGGGAGUUUgCg -3'
miRNA:   3'- cUUGGug--ACGU-GGACGUCUUUAGAgG- -5'
2696 5' -50.3 NC_001491.2 + 59562 0.69 0.959556
Target:  5'- -uGCUgauGCUGCGCCUGUucgauGAGAgCUCCc -3'
miRNA:   3'- cuUGG---UGACGUGGACGu----CUUUaGAGG- -5'
2696 5' -50.3 NC_001491.2 + 29389 0.69 0.955642
Target:  5'- aGugCGC-GCGCCUGCAGGcgcuGUCUaCCc -3'
miRNA:   3'- cUugGUGaCGUGGACGUCUu---UAGA-GG- -5'
2696 5' -50.3 NC_001491.2 + 58427 0.69 0.955642
Target:  5'- cGAGCCGCUgcaGCACCUcuggGCAGccggCUCUa -3'
miRNA:   3'- -CUUGGUGA---CGUGGA----CGUCuuuaGAGG- -5'
2696 5' -50.3 NC_001491.2 + 26562 0.69 0.951479
Target:  5'- uAACCGCUGCGCCauccaGgGGAAAauugcgCUCCu -3'
miRNA:   3'- cUUGGUGACGUGGa----CgUCUUUa-----GAGG- -5'
2696 5' -50.3 NC_001491.2 + 81225 0.69 0.951479
Target:  5'- uGACCAC-GCGCC-GCAGGuacgcauccgcGUCUCCg -3'
miRNA:   3'- cUUGGUGaCGUGGaCGUCUu----------UAGAGG- -5'
2696 5' -50.3 NC_001491.2 + 44937 0.7 0.926796
Target:  5'- -cGCCGC-GCACCUGUgauGGAagcGAUUUCCu -3'
miRNA:   3'- cuUGGUGaCGUGGACG---UCU---UUAGAGG- -5'
2696 5' -50.3 NC_001491.2 + 137357 0.7 0.926796
Target:  5'- -cGCCGcCUGUGCCUGCGGGccuGUCgacgUCCg -3'
miRNA:   3'- cuUGGU-GACGUGGACGUCUu--UAG----AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.