miRNA display CGI


Results 21 - 40 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26982 3' -52.5 NC_005809.1 + 8283 0.76 0.308529
Target:  5'- cGCACgcuaUCGACCAGGCCGcggaauucuUCAACGGUCa -3'
miRNA:   3'- -CGUGg---AGCUGGUCUGGU---------AGUUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 8392 0.67 0.754715
Target:  5'- cGCGCUggcugcguagccagUCGGCCAgGGCCGUgCGcuugucuACGGCCu -3'
miRNA:   3'- -CGUGG--------------AGCUGGU-CUGGUA-GU-------UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 9187 0.7 0.615121
Target:  5'- gGCGCCgUCGACguuGGCCugcUCGGCGGCg -3'
miRNA:   3'- -CGUGG-AGCUGgu-CUGGu--AGUUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 9599 0.66 0.836804
Target:  5'- cGCACCUCGGgCGugaguucGACguUCAG-GGCCu -3'
miRNA:   3'- -CGUGGAGCUgGU-------CUGguAGUUgCUGG- -5'
26982 3' -52.5 NC_005809.1 + 9716 0.75 0.324482
Target:  5'- -aAUCUCGGCgCcGACCGUCuGCGGCCa -3'
miRNA:   3'- cgUGGAGCUG-GuCUGGUAGuUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 9765 0.77 0.264287
Target:  5'- uCGCCUCGAaguCCAGAUCGUUccacGCGGCCa -3'
miRNA:   3'- cGUGGAGCU---GGUCUGGUAGu---UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 9884 0.68 0.693802
Target:  5'- uGCuuCUCGGCCAGGCgCGU-GGCGAUg -3'
miRNA:   3'- -CGugGAGCUGGUCUG-GUAgUUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 9971 0.73 0.429726
Target:  5'- gGC-CCUUGACCGGGCCAgcuuggucacagcgUCGGCGGuguCCu -3'
miRNA:   3'- -CGuGGAGCUGGUCUGGU--------------AGUUGCU---GG- -5'
26982 3' -52.5 NC_005809.1 + 10217 0.79 0.186154
Target:  5'- -gGCCUCGGCgGcGACCG-CAGCGACCu -3'
miRNA:   3'- cgUGGAGCUGgU-CUGGUaGUUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 10300 0.72 0.498316
Target:  5'- aGCACCUCGgggugccacuucGCCAGuuucgccaggccguaGCCGUCGcuGCGGCg -3'
miRNA:   3'- -CGUGGAGC------------UGGUC---------------UGGUAGU--UGCUGg -5'
26982 3' -52.5 NC_005809.1 + 10609 0.68 0.715893
Target:  5'- uGCACCgcauaGAaauuCCcGACCAUCGACGAa- -3'
miRNA:   3'- -CGUGGag---CU----GGuCUGGUAGUUGCUgg -5'
26982 3' -52.5 NC_005809.1 + 10658 0.68 0.737637
Target:  5'- aGCGCCUCGaaacGCCGcaggcacucGGCC-UCGAUGGCg -3'
miRNA:   3'- -CGUGGAGC----UGGU---------CUGGuAGUUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 10758 0.69 0.6264
Target:  5'- gGCGCgCUCGACUucGGCCcgCAGuucuuCGGCCu -3'
miRNA:   3'- -CGUG-GAGCUGGu-CUGGuaGUU-----GCUGG- -5'
26982 3' -52.5 NC_005809.1 + 11029 0.73 0.413218
Target:  5'- aCACCUgcUGcACCGGGCCGUUcuCGGCCg -3'
miRNA:   3'- cGUGGA--GC-UGGUCUGGUAGuuGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 11382 0.69 0.660225
Target:  5'- gGCACCUcgguggCGACCugauGGGCCAgggucuugagCAGCGGCg -3'
miRNA:   3'- -CGUGGA------GCUGG----UCUGGUa---------GUUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 11557 0.67 0.769383
Target:  5'- -uGCCUCGGCCGGcaaGCC--CGugGACa -3'
miRNA:   3'- cgUGGAGCUGGUC---UGGuaGUugCUGg -5'
26982 3' -52.5 NC_005809.1 + 12071 0.72 0.504703
Target:  5'- cCACCUCGugCucaACC-UCGACGACUu -3'
miRNA:   3'- cGUGGAGCugGuc-UGGuAGUUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 13155 0.72 0.473144
Target:  5'- uGCGCCUCGAUgucGGCCAguguCGGCCg -3'
miRNA:   3'- -CGUGGAGCUGgu-CUGGUaguuGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 14230 0.67 0.779685
Target:  5'- cGCGCUgcccgacgaGGCCaAGGCCAUCGAgucCGACg -3'
miRNA:   3'- -CGUGGag-------CUGG-UCUGGUAGUU---GCUGg -5'
26982 3' -52.5 NC_005809.1 + 14517 0.8 0.161965
Target:  5'- cGCugUUCGAgCAGACCGUCGcCGACg -3'
miRNA:   3'- -CGugGAGCUgGUCUGGUAGUuGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.