Results 21 - 40 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26982 | 3' | -52.5 | NC_005809.1 | + | 36184 | 0.66 | 0.818215 |
Target: 5'- aCACCgggcCGGCCGGccugcgccugauuGCCGaCGugGGCCg -3' miRNA: 3'- cGUGGa---GCUGGUC-------------UGGUaGUugCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 37632 | 0.66 | 0.809577 |
Target: 5'- -aACCUcgcagaCGugCAGACCGUC-GCGGgCa -3' miRNA: 3'- cgUGGA------GCugGUCUGGUAGuUGCUgG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 32771 | 0.66 | 0.809577 |
Target: 5'- cGCugCUUGACUGGuuCggCGugcGCGACCu -3' miRNA: 3'- -CGugGAGCUGGUCugGuaGU---UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 23208 | 0.66 | 0.809577 |
Target: 5'- -gGCCcUGGCC-GACC-UCAACGGCa -3' miRNA: 3'- cgUGGaGCUGGuCUGGuAGUUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 7353 | 0.66 | 0.83771 |
Target: 5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3' miRNA: 3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 2028 | 0.66 | 0.83771 |
Target: 5'- aGCACCggcauACCGG-CCGccUCGGCGACg -3' miRNA: 3'- -CGUGGagc--UGGUCuGGU--AGUUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 2247 | 0.66 | 0.809577 |
Target: 5'- cGgGCCUUGGCCGG-CaguUCGACGcgcACCa -3' miRNA: 3'- -CgUGGAGCUGGUCuGgu-AGUUGC---UGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 32885 | 0.66 | 0.799793 |
Target: 5'- cGCGCC-CGACUGGAaggaCAaCAagaacuGCGGCCa -3' miRNA: 3'- -CGUGGaGCUGGUCUg---GUaGU------UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 14799 | 0.66 | 0.808607 |
Target: 5'- cGCGCUUCGuguacguguccgaGCCGGACgAgggCAGCGAg- -3' miRNA: 3'- -CGUGGAGC-------------UGGUCUGgUa--GUUGCUgg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 26861 | 0.66 | 0.819164 |
Target: 5'- cGCGCCaguUCGAugcCCAGGCggacgccuucuuCGUCGauaGCGGCCu -3' miRNA: 3'- -CGUGG---AGCU---GGUCUG------------GUAGU---UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 34955 | 0.66 | 0.819164 |
Target: 5'- cGCGCCc---CCuGACCAUCAccACGGCa -3' miRNA: 3'- -CGUGGagcuGGuCUGGUAGU--UGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 27421 | 0.67 | 0.789825 |
Target: 5'- cGCGCCUggCGcACCGcGCC--CGGCGGCCg -3' miRNA: 3'- -CGUGGA--GC-UGGUcUGGuaGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 7234 | 0.67 | 0.789825 |
Target: 5'- uGCaACUUCGGCCacuggcgcGGGCCGaugUCGcCGGCCu -3' miRNA: 3'- -CG-UGGAGCUGG--------UCUGGU---AGUuGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 15385 | 0.67 | 0.748347 |
Target: 5'- cGCGuCCgCGugCGGGCCggCGaagaugccggACGACCg -3' miRNA: 3'- -CGU-GGaGCugGUCUGGuaGU----------UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 15758 | 0.67 | 0.779685 |
Target: 5'- cGCACCUCGuuGCCGccaauggugcGACgCA-CGACGGCa -3' miRNA: 3'- -CGUGGAGC--UGGU----------CUG-GUaGUUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 8392 | 0.67 | 0.754715 |
Target: 5'- cGCGCUggcugcguagccagUCGGCCAgGGCCGUgCGcuugucuACGGCCu -3' miRNA: 3'- -CGUGG--------------AGCUGGU-CUGGUA-GU-------UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 28550 | 0.67 | 0.779685 |
Target: 5'- -gACCUugCGGCCGccGGCCAUC-GCGGCg -3' miRNA: 3'- cgUGGA--GCUGGU--CUGGUAGuUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 23879 | 0.67 | 0.789825 |
Target: 5'- cGCugCUgcUGACCgAGGCCcgCGugGugUa -3' miRNA: 3'- -CGugGA--GCUGG-UCUGGuaGUugCugG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 18631 | 0.67 | 0.789825 |
Target: 5'- -gACCUCGccgggcgugcGCCuGACCAUCA-CG-CCu -3' miRNA: 3'- cgUGGAGC----------UGGuCUGGUAGUuGCuGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 1450 | 0.67 | 0.779685 |
Target: 5'- aCACCUucuUGACgGcGCgGUCGGCGGCCu -3' miRNA: 3'- cGUGGA---GCUGgUcUGgUAGUUGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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