miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26982 3' -52.5 NC_005809.1 + 3409 0.66 0.819164
Target:  5'- -uGCCUUGGCgGGGCCuuu--CGGCCc -3'
miRNA:   3'- cgUGGAGCUGgUCUGGuaguuGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 35797 0.66 0.819164
Target:  5'- gGCGCUga-ACCAGGCCAUCGAgcagguCG-CCa -3'
miRNA:   3'- -CGUGGagcUGGUCUGGUAGUU------GCuGG- -5'
26982 3' -52.5 NC_005809.1 + 33849 0.66 0.799793
Target:  5'- cGCGCC-CG-CCGGGCaCAUCuuCGugUu -3'
miRNA:   3'- -CGUGGaGCuGGUCUG-GUAGuuGCugG- -5'
26982 3' -52.5 NC_005809.1 + 4579 0.66 0.806662
Target:  5'- cGCugCUCGgugcGCCAGGCgAggaacugcucggccUCGGCGAUg -3'
miRNA:   3'- -CGugGAGC----UGGUCUGgU--------------AGUUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 27719 0.66 0.799793
Target:  5'- gGCGCCcagCGugCGGcgcugGCCGcCAACGGCa -3'
miRNA:   3'- -CGUGGa--GCugGUC-----UGGUaGUUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 9599 0.66 0.836804
Target:  5'- cGCACCUCGGgCGugaguucGACguUCAG-GGCCu -3'
miRNA:   3'- -CGUGGAGCUgGU-------CUGguAGUUgCUGG- -5'
26982 3' -52.5 NC_005809.1 + 34965 0.66 0.819164
Target:  5'- gGCGCUgcgCGACCAcGugcuguccACCGUCGccgACGACUu -3'
miRNA:   3'- -CGUGGa--GCUGGU-C--------UGGUAGU---UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 37277 0.66 0.809577
Target:  5'- -gGCCUCGaccuGCCAGACaugcagcaAUCGACG-CUg -3'
miRNA:   3'- cgUGGAGC----UGGUCUGg-------UAGUUGCuGG- -5'
26982 3' -52.5 NC_005809.1 + 4434 0.66 0.818215
Target:  5'- cGCGCCagGgggaagccGCCAGcgguggcACCGUCAugcacaACGACCg -3'
miRNA:   3'- -CGUGGagC--------UGGUC-------UGGUAGU------UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 27368 0.66 0.828546
Target:  5'- aGCA-CUCGuCCAG-CCAUU--CGGCCa -3'
miRNA:   3'- -CGUgGAGCuGGUCuGGUAGuuGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 7353 0.66 0.83771
Target:  5'- cGCgGCCUCGACCucGGCgucguuCGUCcAGCGGCg -3'
miRNA:   3'- -CG-UGGAGCUGGu-CUG------GUAG-UUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 34012 0.66 0.819164
Target:  5'- cGCGCCugUCGcuGCCc-GCCAUCGgcGCGGCUg -3'
miRNA:   3'- -CGUGG--AGC--UGGucUGGUAGU--UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 14799 0.66 0.808607
Target:  5'- cGCGCUUCGuguacguguccgaGCCGGACgAgggCAGCGAg- -3'
miRNA:   3'- -CGUGGAGC-------------UGGUCUGgUa--GUUGCUgg -5'
26982 3' -52.5 NC_005809.1 + 2247 0.66 0.809577
Target:  5'- cGgGCCUUGGCCGG-CaguUCGACGcgcACCa -3'
miRNA:   3'- -CgUGGAGCUGGUCuGgu-AGUUGC---UGG- -5'
26982 3' -52.5 NC_005809.1 + 32716 0.66 0.809577
Target:  5'- cGCGCCgguGCCAcGCuCAUCGACG-CCg -3'
miRNA:   3'- -CGUGGagcUGGUcUG-GUAGUUGCuGG- -5'
26982 3' -52.5 NC_005809.1 + 37632 0.66 0.809577
Target:  5'- -aACCUcgcagaCGugCAGACCGUC-GCGGgCa -3'
miRNA:   3'- cgUGGA------GCugGUCUGGUAGuUGCUgG- -5'
26982 3' -52.5 NC_005809.1 + 31521 0.66 0.809577
Target:  5'- aGCAgUUCGucGCCAaugcGGCCGagAACGGCCc -3'
miRNA:   3'- -CGUgGAGC--UGGU----CUGGUagUUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 23208 0.66 0.809577
Target:  5'- -gGCCcUGGCC-GACC-UCAACGGCa -3'
miRNA:   3'- cgUGGaGCUGGuCUGGuAGUUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 32771 0.66 0.809577
Target:  5'- cGCugCUUGACUGGuuCggCGugcGCGACCu -3'
miRNA:   3'- -CGugGAGCUGGUCugGuaGU---UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 31880 0.66 0.83771
Target:  5'- uGCAagacccCCUC-ACCAGuuccGCCAUCGA-GGCCg -3'
miRNA:   3'- -CGU------GGAGcUGGUC----UGGUAGUUgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.