Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26982 | 3' | -52.5 | NC_005809.1 | + | 42146 | 0.7 | 0.59262 |
Target: 5'- aGCACUaaGACCAacguGGCCcgCGACGugCu -3' miRNA: 3'- -CGUGGagCUGGU----CUGGuaGUUGCugG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 29989 | 0.72 | 0.494078 |
Target: 5'- uGCAgCCgUCGAaCGGGCCAUCGugcuccaacugcACGGCCg -3' miRNA: 3'- -CGU-GG-AGCUgGUCUGGUAGU------------UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 10300 | 0.72 | 0.498316 |
Target: 5'- aGCACCUCGgggugccacuucGCCAGuuucgccaggccguaGCCGUCGcuGCGGCg -3' miRNA: 3'- -CGUGGAGC------------UGGUC---------------UGGUAGU--UGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 24748 | 0.71 | 0.515425 |
Target: 5'- cGCgGCCUCGACCcauGCUGUCGgaAUGACCu -3' miRNA: 3'- -CG-UGGAGCUGGuc-UGGUAGU--UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 23225 | 0.71 | 0.526238 |
Target: 5'- -gGCCUCGGCCucGGCCAc---CGACCg -3' miRNA: 3'- cgUGGAGCUGGu-CUGGUaguuGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 30974 | 0.71 | 0.537135 |
Target: 5'- cUACUUCGGCguGACgGUgGACGAUCu -3' miRNA: 3'- cGUGGAGCUGguCUGgUAgUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 40978 | 0.71 | 0.537135 |
Target: 5'- aCGCaCUCGACC--ACCAggaaggCGGCGGCCa -3' miRNA: 3'- cGUG-GAGCUGGucUGGUa-----GUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 18268 | 0.7 | 0.581418 |
Target: 5'- uGCGCCgagaacuuGCCGG-CCGUCAGCgGGCCg -3' miRNA: 3'- -CGUGGagc-----UGGUCuGGUAGUUG-CUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 17097 | 0.7 | 0.590376 |
Target: 5'- cGguUCUCGGCCGGGCCuuggggcuUGACCa -3' miRNA: 3'- -CguGGAGCUGGUCUGGuaguu---GCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 13155 | 0.72 | 0.473144 |
Target: 5'- uGCGCCUCGAUgucGGCCAguguCGGCCg -3' miRNA: 3'- -CGUGGAGCUGgu-CUGGUaguuGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 11029 | 0.73 | 0.413218 |
Target: 5'- aCACCUgcUGcACCGGGCCGUUcuCGGCCg -3' miRNA: 3'- cGUGGA--GC-UGGUCUGGUAGuuGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 35710 | 0.74 | 0.36701 |
Target: 5'- uCugUUCGagGCCaAGACCGUCAACGGCg -3' miRNA: 3'- cGugGAGC--UGG-UCUGGUAGUUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 40628 | 0.79 | 0.196692 |
Target: 5'- cGCGCgCUCGACCAGAaCCcgCAgACGAUCc -3' miRNA: 3'- -CGUG-GAGCUGGUCU-GGuaGU-UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 28203 | 0.78 | 0.207747 |
Target: 5'- gGCGCCUUGuCCAGgucgGCCAcgcCGACGACCa -3' miRNA: 3'- -CGUGGAGCuGGUC----UGGUa--GUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 14812 | 0.78 | 0.221717 |
Target: 5'- uGCACCUCGGcggcgcugccuucgcCCAGgucgauGCCGUUGGCGGCCa -3' miRNA: 3'- -CGUGGAGCU---------------GGUC------UGGUAGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 29030 | 0.77 | 0.243516 |
Target: 5'- cGCGCUUCGGCCAGGucgauacCCAcCGGCGGCUc -3' miRNA: 3'- -CGUGGAGCUGGUCU-------GGUaGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 9765 | 0.77 | 0.264287 |
Target: 5'- uCGCCUCGAaguCCAGAUCGUUccacGCGGCCa -3' miRNA: 3'- cGUGGAGCU---GGUCUGGUAGu---UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 34761 | 0.76 | 0.285733 |
Target: 5'- cGCGCCUCGACCA---UAUCAGCGAgUg -3' miRNA: 3'- -CGUGGAGCUGGUcugGUAGUUGCUgG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 8283 | 0.76 | 0.308529 |
Target: 5'- cGCACgcuaUCGACCAGGCCGcggaauucuUCAACGGUCa -3' miRNA: 3'- -CGUGg---AGCUGGUCUGGU---------AGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 24149 | 0.75 | 0.31643 |
Target: 5'- cGCGCCUgGcCCAGcGCC-UCGACGGCUg -3' miRNA: 3'- -CGUGGAgCuGGUC-UGGuAGUUGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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