Results 1 - 20 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26982 | 3' | -52.5 | NC_005809.1 | + | 37092 | 1.15 | 0.000625 |
Target: 5'- gGCACCUCGACCAGACCAUCAACGACCg -3' miRNA: 3'- -CGUGGAGCUGGUCUGGUAGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 14517 | 0.8 | 0.161965 |
Target: 5'- cGCugUUCGAgCAGACCGUCGcCGACg -3' miRNA: 3'- -CGugGAGCUgGUCUGGUAGUuGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 10217 | 0.79 | 0.186154 |
Target: 5'- -gGCCUCGGCgGcGACCG-CAGCGACCu -3' miRNA: 3'- cgUGGAGCUGgU-CUGGUaGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 6584 | 0.79 | 0.186154 |
Target: 5'- cCGCCUCGGCCAGgggGCUgcggucuuuGUCGAUGACCa -3' miRNA: 3'- cGUGGAGCUGGUC---UGG---------UAGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 40628 | 0.79 | 0.196692 |
Target: 5'- cGCGCgCUCGACCAGAaCCcgCAgACGAUCc -3' miRNA: 3'- -CGUG-GAGCUGGUCU-GGuaGU-UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 28203 | 0.78 | 0.207747 |
Target: 5'- gGCGCCUUGuCCAGgucgGCCAcgcCGACGACCa -3' miRNA: 3'- -CGUGGAGCuGGUC----UGGUa--GUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 14812 | 0.78 | 0.221717 |
Target: 5'- uGCACCUCGGcggcgcugccuucgcCCAGgucgauGCCGUUGGCGGCCa -3' miRNA: 3'- -CGUGGAGCU---------------GGUC------UGGUAGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 19014 | 0.77 | 0.237746 |
Target: 5'- cGCACCugccggcgaugUCGGCCgAGGCCAUCGaccGCGugCg -3' miRNA: 3'- -CGUGG-----------AGCUGG-UCUGGUAGU---UGCugG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 33378 | 0.77 | 0.237746 |
Target: 5'- cGCGCCgcCGAgCAGGCCAacgUCGACGGCg -3' miRNA: 3'- -CGUGGa-GCUgGUCUGGU---AGUUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 29030 | 0.77 | 0.243516 |
Target: 5'- cGCGCUUCGGCCAGGucgauacCCAcCGGCGGCUc -3' miRNA: 3'- -CGUGGAGCUGGUCU-------GGUaGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 9765 | 0.77 | 0.264287 |
Target: 5'- uCGCCUCGAaguCCAGAUCGUUccacGCGGCCa -3' miRNA: 3'- cGUGGAGCU---GGUCUGGUAGu---UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 24040 | 0.77 | 0.267069 |
Target: 5'- -gACUUCGGCCAGGCCAaucccaacaccggcaUgGAUGACCg -3' miRNA: 3'- cgUGGAGCUGGUCUGGU---------------AgUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 16375 | 0.76 | 0.271287 |
Target: 5'- aCGCCUCGACCuacaccgaaGCCAUCGccaccgaaaucuGCGACCg -3' miRNA: 3'- cGUGGAGCUGGuc-------UGGUAGU------------UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 34761 | 0.76 | 0.285733 |
Target: 5'- cGCGCCUCGACCA---UAUCAGCGAgUg -3' miRNA: 3'- -CGUGGAGCUGGUcugGUAGUUGCUgG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 8283 | 0.76 | 0.308529 |
Target: 5'- cGCACgcuaUCGACCAGGCCGcggaauucuUCAACGGUCa -3' miRNA: 3'- -CGUGg---AGCUGGUCUGGU---------AGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 24149 | 0.75 | 0.31643 |
Target: 5'- cGCGCCUgGcCCAGcGCC-UCGACGGCUg -3' miRNA: 3'- -CGUGGAgCuGGUC-UGGuAGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 20510 | 0.75 | 0.31643 |
Target: 5'- cGCGCCgaccgCGACCcGAgCAagcgCGACGACCg -3' miRNA: 3'- -CGUGGa----GCUGGuCUgGUa---GUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 26950 | 0.75 | 0.324482 |
Target: 5'- aGCACCUCGAagGGAaaaCCGUCAGCauccuGGCCg -3' miRNA: 3'- -CGUGGAGCUggUCU---GGUAGUUG-----CUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 35255 | 0.75 | 0.324482 |
Target: 5'- gGCugCUgCGuuCgCAGACCAUCGACGGCg -3' miRNA: 3'- -CGugGA-GCu-G-GUCUGGUAGUUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 9716 | 0.75 | 0.324482 |
Target: 5'- -aAUCUCGGCgCcGACCGUCuGCGGCCa -3' miRNA: 3'- cgUGGAGCUG-GuCUGGUAGuUGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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