miRNA display CGI


Results 41 - 60 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26982 3' -52.5 NC_005809.1 + 28550 0.67 0.779685
Target:  5'- -gACCUugCGGCCGccGGCCAUC-GCGGCg -3'
miRNA:   3'- cgUGGA--GCUGGU--CUGGUAGuUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 14230 0.67 0.779685
Target:  5'- cGCGCUgcccgacgaGGCCaAGGCCAUCGAgucCGACg -3'
miRNA:   3'- -CGUGGag-------CUGG-UCUGGUAGUU---GCUGg -5'
26982 3' -52.5 NC_005809.1 + 21721 0.67 0.779685
Target:  5'- cGCGCCgUCGugCAGucggucaguuCCcgCGAUGACg -3'
miRNA:   3'- -CGUGG-AGCugGUCu---------GGuaGUUGCUGg -5'
26982 3' -52.5 NC_005809.1 + 1450 0.67 0.779685
Target:  5'- aCACCUucuUGACgGcGCgGUCGGCGGCCu -3'
miRNA:   3'- cGUGGA---GCUGgUcUGgUAGUUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 34347 0.67 0.779685
Target:  5'- aGCugCUgaCGGCCGccGACCAgc-GCGACUa -3'
miRNA:   3'- -CGugGA--GCUGGU--CUGGUaguUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 25767 0.67 0.778661
Target:  5'- uGCGCCgccugggcgCGACCAacuggcaacuggcGACCAUCGccuucACGucGCCg -3'
miRNA:   3'- -CGUGGa--------GCUGGU-------------CUGGUAGU-----UGC--UGG- -5'
26982 3' -52.5 NC_005809.1 + 11557 0.67 0.769383
Target:  5'- -uGCCUCGGCCGGcaaGCC--CGugGACa -3'
miRNA:   3'- cgUGGAGCUGGUC---UGGuaGUugCUGg -5'
26982 3' -52.5 NC_005809.1 + 24284 0.67 0.769383
Target:  5'- aCACCgUCGccACCGGcCCGcUGACGGCCg -3'
miRNA:   3'- cGUGG-AGC--UGGUCuGGUaGUUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 38292 0.67 0.766263
Target:  5'- uCACCgcCGACaCGG-CCAUCAccaugccggcgcugACGGCCg -3'
miRNA:   3'- cGUGGa-GCUG-GUCuGGUAGU--------------UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 29898 0.67 0.76313
Target:  5'- cGgGCCUCGACaCGcGCCugcgcaugaugggCGACGACCc -3'
miRNA:   3'- -CgUGGAGCUG-GUcUGGua-----------GUUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 27295 0.67 0.758933
Target:  5'- cGCGCCUUGGCgaAGGCUucccaCGACGcCCa -3'
miRNA:   3'- -CGUGGAGCUGg-UCUGGua---GUUGCuGG- -5'
26982 3' -52.5 NC_005809.1 + 32851 0.67 0.758933
Target:  5'- uCGCCU-GGCCgcAGACgGUCGGCG-CCg -3'
miRNA:   3'- cGUGGAgCUGG--UCUGgUAGUUGCuGG- -5'
26982 3' -52.5 NC_005809.1 + 38379 0.67 0.758933
Target:  5'- cGUGCUcgCGGCCAacaugcccGCCAUCGagGCGGCCg -3'
miRNA:   3'- -CGUGGa-GCUGGUc-------UGGUAGU--UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 17267 0.67 0.758933
Target:  5'- aGCGCCggUGGCaGGGCCGgccgC-ACGACCu -3'
miRNA:   3'- -CGUGGa-GCUGgUCUGGUa---GuUGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 8392 0.67 0.754715
Target:  5'- cGCGCUggcugcguagccagUCGGCCAgGGCCGUgCGcuugucuACGGCCu -3'
miRNA:   3'- -CGUGG--------------AGCUGGU-CUGGUA-GU-------UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 15604 0.67 0.752597
Target:  5'- cGCGCCaUCGGCCAGGaugcugacgguuuucCCuUCGAgGugCu -3'
miRNA:   3'- -CGUGG-AGCUGGUCU---------------GGuAGUUgCugG- -5'
26982 3' -52.5 NC_005809.1 + 15385 0.67 0.748347
Target:  5'- cGCGuCCgCGugCGGGCCggCGaagaugccggACGACCg -3'
miRNA:   3'- -CGU-GGaGCugGUCUGGuaGU----------UGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 39765 0.67 0.748347
Target:  5'- aGCACCU-GGCCcGACgaAUCGACGAa- -3'
miRNA:   3'- -CGUGGAgCUGGuCUGg-UAGUUGCUgg -5'
26982 3' -52.5 NC_005809.1 + 20315 0.67 0.747281
Target:  5'- uCGCUgaCGGCCGGcgaauacGCCAUCG-CGGCCg -3'
miRNA:   3'- cGUGGa-GCUGGUC-------UGGUAGUuGCUGG- -5'
26982 3' -52.5 NC_005809.1 + 7731 0.68 0.737637
Target:  5'- cGCACgCUCGgcgGCCGGcuuGCUGUUGGCGACg -3'
miRNA:   3'- -CGUG-GAGC---UGGUC---UGGUAGUUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.