Results 21 - 40 of 152 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26982 | 3' | -52.5 | NC_005809.1 | + | 37277 | 0.66 | 0.809577 |
Target: 5'- -gGCCUCGaccuGCCAGACaugcagcaAUCGACG-CUg -3' miRNA: 3'- cgUGGAGC----UGGUCUGg-------UAGUUGCuGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 2247 | 0.66 | 0.809577 |
Target: 5'- cGgGCCUUGGCCGG-CaguUCGACGcgcACCa -3' miRNA: 3'- -CgUGGAGCUGGUCuGgu-AGUUGC---UGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 32771 | 0.66 | 0.809577 |
Target: 5'- cGCugCUUGACUGGuuCggCGugcGCGACCu -3' miRNA: 3'- -CGugGAGCUGGUCugGuaGU---UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 32716 | 0.66 | 0.809577 |
Target: 5'- cGCGCCgguGCCAcGCuCAUCGACG-CCg -3' miRNA: 3'- -CGUGGagcUGGUcUG-GUAGUUGCuGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 31521 | 0.66 | 0.809577 |
Target: 5'- aGCAgUUCGucGCCAaugcGGCCGagAACGGCCc -3' miRNA: 3'- -CGUgGAGC--UGGU----CUGGUagUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 37632 | 0.66 | 0.809577 |
Target: 5'- -aACCUcgcagaCGugCAGACCGUC-GCGGgCa -3' miRNA: 3'- cgUGGA------GCugGUCUGGUAGuUGCUgG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 14799 | 0.66 | 0.808607 |
Target: 5'- cGCGCUUCGuguacguguccgaGCCGGACgAgggCAGCGAg- -3' miRNA: 3'- -CGUGGAGC-------------UGGUCUGgUa--GUUGCUgg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 4579 | 0.66 | 0.806662 |
Target: 5'- cGCugCUCGgugcGCCAGGCgAggaacugcucggccUCGGCGAUg -3' miRNA: 3'- -CGugGAGC----UGGUCUGgU--------------AGUUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 33849 | 0.66 | 0.799793 |
Target: 5'- cGCGCC-CG-CCGGGCaCAUCuuCGugUu -3' miRNA: 3'- -CGUGGaGCuGGUCUG-GUAGuuGCugG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 27719 | 0.66 | 0.799793 |
Target: 5'- gGCGCCcagCGugCGGcgcugGCCGcCAACGGCa -3' miRNA: 3'- -CGUGGa--GCugGUC-----UGGUaGUUGCUGg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 32885 | 0.66 | 0.799793 |
Target: 5'- cGCGCC-CGACUGGAaggaCAaCAagaacuGCGGCCa -3' miRNA: 3'- -CGUGGaGCUGGUCUg---GUaGU------UGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 18631 | 0.67 | 0.789825 |
Target: 5'- -gACCUCGccgggcgugcGCCuGACCAUCA-CG-CCu -3' miRNA: 3'- cgUGGAGC----------UGGuCUGGUAGUuGCuGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 27421 | 0.67 | 0.789825 |
Target: 5'- cGCGCCUggCGcACCGcGCC--CGGCGGCCg -3' miRNA: 3'- -CGUGGA--GC-UGGUcUGGuaGUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 6640 | 0.67 | 0.789825 |
Target: 5'- cGCGCgCUUGGCCGGAgUGUCcGCGcucauggucugcGCCa -3' miRNA: 3'- -CGUG-GAGCUGGUCUgGUAGuUGC------------UGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 28651 | 0.67 | 0.789825 |
Target: 5'- cGCGCagu-GCCAGAUCGgugcCGGCGGCCu -3' miRNA: 3'- -CGUGgagcUGGUCUGGUa---GUUGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 7234 | 0.67 | 0.789825 |
Target: 5'- uGCaACUUCGGCCacuggcgcGGGCCGaugUCGcCGGCCu -3' miRNA: 3'- -CG-UGGAGCUGG--------UCUGGU---AGUuGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 16107 | 0.67 | 0.789825 |
Target: 5'- -gACCaCGACCGGcuGCaCGUCggUGGCCc -3' miRNA: 3'- cgUGGaGCUGGUC--UG-GUAGuuGCUGG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 23879 | 0.67 | 0.789825 |
Target: 5'- cGCugCUgcUGACCgAGGCCcgCGugGugUa -3' miRNA: 3'- -CGugGA--GCUGG-UCUGGuaGUugCugG- -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 38222 | 0.67 | 0.788819 |
Target: 5'- cGCACCggcaacgcaaCGGCCAGcaucaaggcuggcACCAUCGugGAg- -3' miRNA: 3'- -CGUGGa---------GCUGGUC-------------UGGUAGUugCUgg -5' |
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26982 | 3' | -52.5 | NC_005809.1 | + | 28550 | 0.67 | 0.779685 |
Target: 5'- -gACCUugCGGCCGccGGCCAUC-GCGGCg -3' miRNA: 3'- cgUGGA--GCUGGU--CUGGUAGuUGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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