Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 37331 | 1.07 | 0.000332 |
Target: 5'- cCCGACCUGCCGGCCGAACUGCGCGAAc -3' miRNA: 3'- -GGCUGGACGGCCGGCUUGACGCGCUU- -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 18005 | 0.8 | 0.0425 |
Target: 5'- cCCGACCgugGCCGGCCucgccaucgccGcGCUGCGCGAc -3' miRNA: 3'- -GGCUGGa--CGGCCGG-----------CuUGACGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 31020 | 0.76 | 0.079576 |
Target: 5'- aCgGGCUUGCCGGCCGAggcaaucgcgcggGCcaacgUGCGCGAAg -3' miRNA: 3'- -GgCUGGACGGCCGGCU-------------UG-----ACGCGCUU- -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 30630 | 0.72 | 0.147227 |
Target: 5'- gCGACCaGCCGGCgCGAAUgaggGCGCa-- -3' miRNA: 3'- gGCUGGaCGGCCG-GCUUGa---CGCGcuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 41104 | 0.72 | 0.151288 |
Target: 5'- cCCGGCCUGCCaggaGGCCGccGACcGCGCc-- -3' miRNA: 3'- -GGCUGGACGG----CCGGC--UUGaCGCGcuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 28230 | 0.72 | 0.151288 |
Target: 5'- aCGACCacgcGCgGGUCGGACUGCGCc-- -3' miRNA: 3'- gGCUGGa---CGgCCGGCUUGACGCGcuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 39024 | 0.72 | 0.159717 |
Target: 5'- gCGGCgCgGuuGGCgGGACUGCGCGGu -3' miRNA: 3'- gGCUG-GaCggCCGgCUUGACGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 13166 | 0.72 | 0.159717 |
Target: 5'- gUCGGCCagUGUCGGCCGcGCUGgGCGc- -3' miRNA: 3'- -GGCUGG--ACGGCCGGCuUGACgCGCuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 32090 | 0.72 | 0.164088 |
Target: 5'- aCGGCCcGUUcgGGCCGGuGCUGCGCGAc -3' miRNA: 3'- gGCUGGaCGG--CCGGCU-UGACGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 36178 | 0.71 | 0.168566 |
Target: 5'- gCGACUacaccggGCCGGCCGGcCUGCGCc-- -3' miRNA: 3'- gGCUGGa------CGGCCGGCUuGACGCGcuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 34625 | 0.71 | 0.177853 |
Target: 5'- gCCGACCUGaaauaUGGCCGug--GCGUGAAg -3' miRNA: 3'- -GGCUGGACg----GCCGGCuugaCGCGCUU- -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 11144 | 0.71 | 0.177853 |
Target: 5'- uUCGGCCUGCUgcugGGCCGc-CUGCGCa-- -3' miRNA: 3'- -GGCUGGACGG----CCGGCuuGACGCGcuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 14911 | 0.71 | 0.182664 |
Target: 5'- gCGAUCUGCUgcuGGCCGGccucaagugccgACUGCGCGc- -3' miRNA: 3'- gGCUGGACGG---CCGGCU------------UGACGCGCuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 42221 | 0.71 | 0.187591 |
Target: 5'- uCgGGCCUGgCGGaCGGccuGCUGCGCGAc -3' miRNA: 3'- -GgCUGGACgGCCgGCU---UGACGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 10918 | 0.7 | 0.199893 |
Target: 5'- gCGACCUGCCcGCCGGuuuGCagggccucgggcaguUGCGCGGc -3' miRNA: 3'- gGCUGGACGGcCGGCU---UG---------------ACGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 41261 | 0.7 | 0.20848 |
Target: 5'- gUCGGCCUGgUGGCCGucGCccuggGCGCGGc -3' miRNA: 3'- -GGCUGGACgGCCGGCu-UGa----CGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 12990 | 0.7 | 0.21966 |
Target: 5'- aCCGcgcGCCUggGCgCGGCCGAcCUGaCGCGAu -3' miRNA: 3'- -GGC---UGGA--CG-GCCGGCUuGAC-GCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 21190 | 0.7 | 0.21966 |
Target: 5'- gCGGCCUGCU-GCUGGuCUGCGCGu- -3' miRNA: 3'- gGCUGGACGGcCGGCUuGACGCGCuu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 12556 | 0.7 | 0.21966 |
Target: 5'- gUGAauuuCUUGCCGGCCucgcGCUGCGCGGc -3' miRNA: 3'- gGCU----GGACGGCCGGcu--UGACGCGCUu -5' |
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26983 | 3' | -60.2 | NC_005809.1 | + | 771 | 0.69 | 0.236776 |
Target: 5'- aCCGuCUUGCCGGUCaGAucgggccGCUGCGCa-- -3' miRNA: 3'- -GGCuGGACGGCCGG-CU-------UGACGCGcuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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