Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 32920 | 0.66 | 0.360919 |
Target: 5'- aCGGCCUGCaCGGCU--GCUGUucggccaggGCGAc -3' miRNA: 3'- gGCUGGACG-GCCGGcuUGACG---------CGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 26270 | 0.69 | 0.262865 |
Target: 5'- gCCGGCCUgGUCGGCuCGcGCaucgcGCGCGAu -3' miRNA: 3'- -GGCUGGA-CGGCCG-GCuUGa----CGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 37583 | 0.68 | 0.2834 |
Target: 5'- gCCGACCUGCUGuucGCCaacgucaugGAACUgaccagcaGCGCGAu -3' miRNA: 3'- -GGCUGGACGGC---CGG---------CUUGA--------CGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 36225 | 0.68 | 0.2834 |
Target: 5'- cCCGGCCUuCgGGCCGGGCgcuuuggcugGgGCGGAa -3' miRNA: 3'- -GGCUGGAcGgCCGGCUUGa---------CgCGCUU- -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 36097 | 0.67 | 0.320408 |
Target: 5'- gCgGGCCUGCgCGGCgugcaGuucCUGCGCGAc -3' miRNA: 3'- -GgCUGGACG-GCCGg----Cuu-GACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 28556 | 0.67 | 0.320408 |
Target: 5'- gCGGCC-GCCGGCCaucGCgGCGCGc- -3' miRNA: 3'- gGCUGGaCGGCCGGcu-UGaCGCGCuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 36837 | 0.67 | 0.32823 |
Target: 5'- cCCGGCgC-GCUGGgCGAuCUGUGCGAc -3' miRNA: 3'- -GGCUG-GaCGGCCgGCUuGACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 39892 | 0.67 | 0.352538 |
Target: 5'- aCGAcaaCCUGCCguGGCUGAucgaacACUGgGCGAc -3' miRNA: 3'- gGCU---GGACGG--CCGGCU------UGACgCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 9200 | 0.66 | 0.360919 |
Target: 5'- uUGGCCUGCuCGGCgGcGCgGCGCa-- -3' miRNA: 3'- gGCUGGACG-GCCGgCuUGaCGCGcuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 21190 | 0.7 | 0.21966 |
Target: 5'- gCGGCCUGCU-GCUGGuCUGCGCGu- -3' miRNA: 3'- gGCUGGACGGcCGGCUuGACGCGCuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 12556 | 0.7 | 0.21966 |
Target: 5'- gUGAauuuCUUGCCGGCCucgcGCUGCGCGGc -3' miRNA: 3'- gGCU----GGACGGCCGGcu--UGACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 10918 | 0.7 | 0.199893 |
Target: 5'- gCGACCUGCCcGCCGGuuuGCagggccucgggcaguUGCGCGGc -3' miRNA: 3'- gGCUGGACGGcCGGCU---UG---------------ACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 31020 | 0.76 | 0.079576 |
Target: 5'- aCgGGCUUGCCGGCCGAggcaaucgcgcggGCcaacgUGCGCGAAg -3' miRNA: 3'- -GgCUGGACGGCCGGCU-------------UG-----ACGCGCUU- -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 30630 | 0.72 | 0.147227 |
Target: 5'- gCGACCaGCCGGCgCGAAUgaggGCGCa-- -3' miRNA: 3'- gGCUGGaCGGCCG-GCUUGa---CGCGcuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 28230 | 0.72 | 0.151288 |
Target: 5'- aCGACCacgcGCgGGUCGGACUGCGCc-- -3' miRNA: 3'- gGCUGGa---CGgCCGGCUUGACGCGcuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 13166 | 0.72 | 0.159717 |
Target: 5'- gUCGGCCagUGUCGGCCGcGCUGgGCGc- -3' miRNA: 3'- -GGCUGG--ACGGCCGGCuUGACgCGCuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 39024 | 0.72 | 0.159717 |
Target: 5'- gCGGCgCgGuuGGCgGGACUGCGCGGu -3' miRNA: 3'- gGCUG-GaCggCCGgCUUGACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 11144 | 0.71 | 0.177853 |
Target: 5'- uUCGGCCUGCUgcugGGCCGc-CUGCGCa-- -3' miRNA: 3'- -GGCUGGACGG----CCGGCuuGACGCGcuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 34625 | 0.71 | 0.177853 |
Target: 5'- gCCGACCUGaaauaUGGCCGug--GCGUGAAg -3' miRNA: 3'- -GGCUGGACg----GCCGGCuugaCGCGCUU- -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 14911 | 0.71 | 0.182664 |
Target: 5'- gCGAUCUGCUgcuGGCCGGccucaagugccgACUGCGCGc- -3' miRNA: 3'- gGCUGGACGG---CCGGCU------------UGACGCGCuu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home