miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26983 3' -60.2 NC_005809.1 + 34625 0.71 0.177853
Target:  5'- gCCGACCUGaaauaUGGCCGug--GCGUGAAg -3'
miRNA:   3'- -GGCUGGACg----GCCGGCuugaCGCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 14911 0.71 0.182664
Target:  5'- gCGAUCUGCUgcuGGCCGGccucaagugccgACUGCGCGc- -3'
miRNA:   3'- gGCUGGACGG---CCGGCU------------UGACGCGCuu -5'
26983 3' -60.2 NC_005809.1 + 10918 0.7 0.199893
Target:  5'- gCGACCUGCCcGCCGGuuuGCagggccucgggcaguUGCGCGGc -3'
miRNA:   3'- gGCUGGACGGcCGGCU---UG---------------ACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 12556 0.7 0.21966
Target:  5'- gUGAauuuCUUGCCGGCCucgcGCUGCGCGGc -3'
miRNA:   3'- gGCU----GGACGGCCGGcu--UGACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 25486 0.69 0.249857
Target:  5'- cCCGGCCgagaaccgcGCCGGCUucGCcuucgUGCGCGAGg -3'
miRNA:   3'- -GGCUGGa--------CGGCCGGcuUG-----ACGCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 15198 0.68 0.276417
Target:  5'- -gGAUUUGCUGGCCGAAUggcuggacgagUGCuGCGAGg -3'
miRNA:   3'- ggCUGGACGGCCGGCUUG-----------ACG-CGCUU- -5'
26983 3' -60.2 NC_005809.1 + 30987 0.68 0.276417
Target:  5'- gCGGCCaGCCGGCgGccCUGgGCGGc -3'
miRNA:   3'- gGCUGGaCGGCCGgCuuGACgCGCUu -5'
26983 3' -60.2 NC_005809.1 + 31808 0.68 0.276417
Target:  5'- gCCGAagaaCUGCgGGCCGAAgUcgaGCGCGc- -3'
miRNA:   3'- -GGCUg---GACGgCCGGCUUgA---CGCGCuu -5'
26983 3' -60.2 NC_005809.1 + 1881 0.68 0.290521
Target:  5'- gUGGCCggcGCUGGCCGGG-UGgGCGAAc -3'
miRNA:   3'- gGCUGGa--CGGCCGGCUUgACgCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 13988 0.68 0.297783
Target:  5'- aCCGACaccacgCUGCCgguGGCCGAcgUGCGCGc- -3'
miRNA:   3'- -GGCUG------GACGG---CCGGCUugACGCGCuu -5'
26983 3' -60.2 NC_005809.1 + 19270 0.68 0.305184
Target:  5'- cCCGGCCagUGCCGGCCGcaAACaggcauucgugGCGCa-- -3'
miRNA:   3'- -GGCUGG--ACGGCCGGC--UUGa----------CGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 518 0.69 0.237386
Target:  5'- -gGGCCaucGCUGGCCGAAUaccucggacgUGCGCGGg -3'
miRNA:   3'- ggCUGGa--CGGCCGGCUUG----------ACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 771 0.69 0.236776
Target:  5'- aCCGuCUUGCCGGUCaGAucgggccGCUGCGCa-- -3'
miRNA:   3'- -GGCuGGACGGCCGG-CU-------UGACGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 12990 0.7 0.21966
Target:  5'- aCCGcgcGCCUggGCgCGGCCGAcCUGaCGCGAu -3'
miRNA:   3'- -GGC---UGGA--CG-GCCGGCUuGAC-GCGCUu -5'
26983 3' -60.2 NC_005809.1 + 41261 0.7 0.20848
Target:  5'- gUCGGCCUGgUGGCCGucGCccuggGCGCGGc -3'
miRNA:   3'- -GGCUGGACgGCCGGCu-UGa----CGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 42221 0.71 0.187591
Target:  5'- uCgGGCCUGgCGGaCGGccuGCUGCGCGAc -3'
miRNA:   3'- -GgCUGGACgGCCgGCU---UGACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 36178 0.71 0.168566
Target:  5'- gCGACUacaccggGCCGGCCGGcCUGCGCc-- -3'
miRNA:   3'- gGCUGGa------CGGCCGGCUuGACGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 32090 0.72 0.164088
Target:  5'- aCGGCCcGUUcgGGCCGGuGCUGCGCGAc -3'
miRNA:   3'- gGCUGGaCGG--CCGGCU-UGACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 41104 0.72 0.151288
Target:  5'- cCCGGCCUGCCaggaGGCCGccGACcGCGCc-- -3'
miRNA:   3'- -GGCUGGACGG----CCGGC--UUGaCGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 19233 0.66 0.404864
Target:  5'- gCGGCgagGCC-GUCGAAUUGCGCGGc -3'
miRNA:   3'- gGCUGga-CGGcCGGCUUGACGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.