miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26983 3' -60.2 NC_005809.1 + 15198 0.68 0.276417
Target:  5'- -gGAUUUGCUGGCCGAAUggcuggacgagUGCuGCGAGg -3'
miRNA:   3'- ggCUGGACGGCCGGCUUG-----------ACG-CGCUU- -5'
26983 3' -60.2 NC_005809.1 + 16313 0.67 0.330604
Target:  5'- gCCGACCagGCCGGCgggugcccgugccuuCGGcgacgcgcgcaaaACUGCGCGc- -3'
miRNA:   3'- -GGCUGGa-CGGCCG---------------GCU-------------UGACGCGCuu -5'
26983 3' -60.2 NC_005809.1 + 18005 0.8 0.0425
Target:  5'- cCCGACCgugGCCGGCCucgccaucgccGcGCUGCGCGAc -3'
miRNA:   3'- -GGCUGGa--CGGCCGG-----------CuUGACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 18628 0.66 0.395808
Target:  5'- gCCGACCUcGCCGGgCG---UGCGCc-- -3'
miRNA:   3'- -GGCUGGA-CGGCCgGCuugACGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 19012 0.66 0.395808
Target:  5'- cCCGcACCUGCCGGC-GAugUcgGC-CGAGg -3'
miRNA:   3'- -GGC-UGGACGGCCGgCUugA--CGcGCUU- -5'
26983 3' -60.2 NC_005809.1 + 19233 0.66 0.404864
Target:  5'- gCGGCgagGCC-GUCGAAUUGCGCGGc -3'
miRNA:   3'- gGCUGga-CGGcCGGCUUGACGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 19270 0.68 0.305184
Target:  5'- cCCGGCCagUGCCGGCCGcaAACaggcauucgugGCGCa-- -3'
miRNA:   3'- -GGCUGG--ACGGCCGGC--UUGa----------CGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 20885 0.67 0.312725
Target:  5'- cUCGACCUGUCgcaccuucuGGCUGAcaucguggACgUGCGCGAGc -3'
miRNA:   3'- -GGCUGGACGG---------CCGGCU--------UG-ACGCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 21190 0.7 0.21966
Target:  5'- gCGGCCUGCU-GCUGGuCUGCGCGu- -3'
miRNA:   3'- gGCUGGACGGcCGGCUuGACGCGCuu -5'
26983 3' -60.2 NC_005809.1 + 21963 0.66 0.378093
Target:  5'- aCCGACCUGCgacGCCGc-CUG-GCGAAg -3'
miRNA:   3'- -GGCUGGACGgc-CGGCuuGACgCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 25486 0.69 0.249857
Target:  5'- cCCGGCCgagaaccgcGCCGGCUucGCcuucgUGCGCGAGg -3'
miRNA:   3'- -GGCUGGa--------CGGCCGGcuUG-----ACGCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 26270 0.69 0.262865
Target:  5'- gCCGGCCUgGUCGGCuCGcGCaucgcGCGCGAu -3'
miRNA:   3'- -GGCUGGA-CGGCCG-GCuUGa----CGCGCUu -5'
26983 3' -60.2 NC_005809.1 + 28230 0.72 0.151288
Target:  5'- aCGACCacgcGCgGGUCGGACUGCGCc-- -3'
miRNA:   3'- gGCUGGa---CGgCCGGCUUGACGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 28556 0.67 0.320408
Target:  5'- gCGGCC-GCCGGCCaucGCgGCGCGc- -3'
miRNA:   3'- gGCUGGaCGGCCGGcu-UGaCGCGCuu -5'
26983 3' -60.2 NC_005809.1 + 30630 0.72 0.147227
Target:  5'- gCGACCaGCCGGCgCGAAUgaggGCGCa-- -3'
miRNA:   3'- gGCUGGaCGGCCG-GCUUGa---CGCGcuu -5'
26983 3' -60.2 NC_005809.1 + 30987 0.68 0.276417
Target:  5'- gCGGCCaGCCGGCgGccCUGgGCGGc -3'
miRNA:   3'- gGCUGGaCGGCCGgCuuGACgCGCUu -5'
26983 3' -60.2 NC_005809.1 + 31020 0.76 0.079576
Target:  5'- aCgGGCUUGCCGGCCGAggcaaucgcgcggGCcaacgUGCGCGAAg -3'
miRNA:   3'- -GgCUGGACGGCCGGCU-------------UG-----ACGCGCUU- -5'
26983 3' -60.2 NC_005809.1 + 31433 0.66 0.386884
Target:  5'- gCGGCCcaGCagcaGGCCGAACUGCucGCa-- -3'
miRNA:   3'- gGCUGGa-CGg---CCGGCUUGACG--CGcuu -5'
26983 3' -60.2 NC_005809.1 + 31808 0.68 0.276417
Target:  5'- gCCGAagaaCUGCgGGCCGAAgUcgaGCGCGc- -3'
miRNA:   3'- -GGCUg---GACGgCCGGCUUgA---CGCGCuu -5'
26983 3' -60.2 NC_005809.1 + 32090 0.72 0.164088
Target:  5'- aCGGCCcGUUcgGGCCGGuGCUGCGCGAc -3'
miRNA:   3'- gGCUGGaCGG--CCGGCU-UGACGCGCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.