Results 1 - 20 of 62 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 18005 | 0.8 | 0.0425 |
Target: 5'- cCCGACCgugGCCGGCCucgccaucgccGcGCUGCGCGAc -3' miRNA: 3'- -GGCUGGa--CGGCCGG-----------CuUGACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 20885 | 0.67 | 0.312725 |
Target: 5'- cUCGACCUGUCgcaccuucuGGCUGAcaucguggACgUGCGCGAGc -3' miRNA: 3'- -GGCUGGACGG---------CCGGCU--------UG-ACGCGCUU- -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 7708 | 0.67 | 0.320407 |
Target: 5'- gCCGGCUUGCCGa-UGAACUGCaGCGc- -3' miRNA: 3'- -GGCUGGACGGCcgGCUUGACG-CGCuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 19233 | 0.66 | 0.404864 |
Target: 5'- gCGGCgagGCC-GUCGAAUUGCGCGGc -3' miRNA: 3'- gGCUGga-CGGcCGGCUUGACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 42221 | 0.71 | 0.187591 |
Target: 5'- uCgGGCCUGgCGGaCGGccuGCUGCGCGAc -3' miRNA: 3'- -GgCUGGACgGCCgGCU---UGACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 41261 | 0.7 | 0.20848 |
Target: 5'- gUCGGCCUGgUGGCCGucGCccuggGCGCGGc -3' miRNA: 3'- -GGCUGGACgGCCGGCu-UGa----CGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 771 | 0.69 | 0.236776 |
Target: 5'- aCCGuCUUGCCGGUCaGAucgggccGCUGCGCa-- -3' miRNA: 3'- -GGCuGGACGGCCGG-CU-------UGACGCGcuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 518 | 0.69 | 0.237386 |
Target: 5'- -gGGCCaucGCUGGCCGAAUaccucggacgUGCGCGGg -3' miRNA: 3'- ggCUGGa--CGGCCGGCUUG----------ACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 30987 | 0.68 | 0.276417 |
Target: 5'- gCGGCCaGCCGGCgGccCUGgGCGGc -3' miRNA: 3'- gGCUGGaCGGCCGgCuuGACgCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 34702 | 0.68 | 0.305184 |
Target: 5'- cCCGACCa-UCGGCCGAAgcCUGaacCGCGAAg -3' miRNA: 3'- -GGCUGGacGGCCGGCUU--GAC---GCGCUU- -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 1881 | 0.68 | 0.290521 |
Target: 5'- gUGGCCggcGCUGGCCGGG-UGgGCGAAc -3' miRNA: 3'- gGCUGGa--CGGCCGGCUUgACgCGCUU- -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 15198 | 0.68 | 0.276417 |
Target: 5'- -gGAUUUGCUGGCCGAAUggcuggacgagUGCuGCGAGg -3' miRNA: 3'- ggCUGGACGGCCGGCUUG-----------ACG-CGCUU- -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 41104 | 0.72 | 0.151288 |
Target: 5'- cCCGGCCUGCCaggaGGCCGccGACcGCGCc-- -3' miRNA: 3'- -GGCUGGACGG----CCGGC--UUGaCGCGcuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 13988 | 0.68 | 0.297783 |
Target: 5'- aCCGACaccacgCUGCCgguGGCCGAcgUGCGCGc- -3' miRNA: 3'- -GGCUG------GACGG---CCGGCUugACGCGCuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 32090 | 0.72 | 0.164088 |
Target: 5'- aCGGCCcGUUcgGGCCGGuGCUGCGCGAc -3' miRNA: 3'- gGCUGGaCGG--CCGGCU-UGACGCGCUu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 25486 | 0.69 | 0.249857 |
Target: 5'- cCCGGCCgagaaccgcGCCGGCUucGCcuucgUGCGCGAGg -3' miRNA: 3'- -GGCUGGa--------CGGCCGGcuUG-----ACGCGCUU- -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 19270 | 0.68 | 0.305184 |
Target: 5'- cCCGGCCagUGCCGGCCGcaAACaggcauucgugGCGCa-- -3' miRNA: 3'- -GGCUGG--ACGGCCGGC--UUGa----------CGCGcuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 35924 | 0.67 | 0.312725 |
Target: 5'- -aGACCUGagcgcggacacuCCGGCCaAGC-GCGCGAAg -3' miRNA: 3'- ggCUGGAC------------GGCCGGcUUGaCGCGCUU- -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 36178 | 0.71 | 0.168566 |
Target: 5'- gCGACUacaccggGCCGGCCGGcCUGCGCc-- -3' miRNA: 3'- gGCUGGa------CGGCCGGCUuGACGCGcuu -5' |
|||||||
26983 | 3' | -60.2 | NC_005809.1 | + | 12990 | 0.7 | 0.21966 |
Target: 5'- aCCGcgcGCCUggGCgCGGCCGAcCUGaCGCGAu -3' miRNA: 3'- -GGC---UGGA--CG-GCCGGCUuGAC-GCGCUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home