miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26985 3' -55.3 NC_005809.1 + 28544 0.66 0.686826
Target:  5'- cGGCA-CGACCUUG-CGgcCGccGGCCa- -3'
miRNA:   3'- -CCGUaGCUGGAACuGC--GCuaCCGGcu -5'
26985 3' -55.3 NC_005809.1 + 14343 0.66 0.686826
Target:  5'- cGCAgucCGACCc--GCGCGuggucgucggcGUGGCCGAc -3'
miRNA:   3'- cCGUa--GCUGGaacUGCGC-----------UACCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 18550 0.66 0.675806
Target:  5'- cGCGUCG-CCUU--CGCuGAauUGGCCGAc -3'
miRNA:   3'- cCGUAGCuGGAAcuGCG-CU--ACCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 31291 0.66 0.675806
Target:  5'- uGGCAgcgaagccuggCGACC---GCGUGGUGGCCc- -3'
miRNA:   3'- -CCGUa----------GCUGGaacUGCGCUACCGGcu -5'
26985 3' -55.3 NC_005809.1 + 35091 0.66 0.672491
Target:  5'- gGGCgcgGUCGAUCUggucgaguccUGgugcaaggccauucGCGCGAaGGCCGAa -3'
miRNA:   3'- -CCG---UAGCUGGA----------AC--------------UGCGCUaCCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 16287 0.66 0.664743
Target:  5'- uGGCAUCcAUCgc-GCGCGAUGcgcgaGCCGAc -3'
miRNA:   3'- -CCGUAGcUGGaacUGCGCUAC-----CGGCU- -5'
26985 3' -55.3 NC_005809.1 + 34112 0.66 0.664743
Target:  5'- cGGCAUCGcaggccACCUcGACGCcGAcaucGcGCCGAu -3'
miRNA:   3'- -CCGUAGC------UGGAaCUGCG-CUa---C-CGGCU- -5'
26985 3' -55.3 NC_005809.1 + 42102 0.66 0.664743
Target:  5'- aGGCAUcCGACCgcGACaGCGcccgcaagcUGGCCGc -3'
miRNA:   3'- -CCGUA-GCUGGaaCUG-CGCu--------ACCGGCu -5'
26985 3' -55.3 NC_005809.1 + 39132 0.66 0.65365
Target:  5'- cGGCGUCuguGACCaccugauucUUGAguaGCGG-GGCCGAa -3'
miRNA:   3'- -CCGUAG---CUGG---------AACUg--CGCUaCCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 42057 0.66 0.65365
Target:  5'- aGGUAuUCGGCCa----GCGAUGGCCc- -3'
miRNA:   3'- -CCGU-AGCUGGaacugCGCUACCGGcu -5'
26985 3' -55.3 NC_005809.1 + 19193 0.66 0.642535
Target:  5'- cGGCGUCGA---UGAUGUucUGGCCGu -3'
miRNA:   3'- -CCGUAGCUggaACUGCGcuACCGGCu -5'
26985 3' -55.3 NC_005809.1 + 12776 0.66 0.642535
Target:  5'- cGGCAUCGAgCgcgaGACaGCGuauGCCGAa -3'
miRNA:   3'- -CCGUAGCUgGaa--CUG-CGCuacCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 41556 0.66 0.639199
Target:  5'- aGCAUggccgaguauuuccCGGCCagUGGCGCGGgcagcgGGCUGAc -3'
miRNA:   3'- cCGUA--------------GCUGGa-ACUGCGCUa-----CCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 13087 0.66 0.631411
Target:  5'- uGGaCA-CGACC--GACGCGGaacUGGCCGc -3'
miRNA:   3'- -CC-GUaGCUGGaaCUGCGCU---ACCGGCu -5'
26985 3' -55.3 NC_005809.1 + 13439 0.67 0.6214
Target:  5'- cGGCAggcccgccagcuuggCGGCCUcgGGCGCGGUG-UCGGg -3'
miRNA:   3'- -CCGUa--------------GCUGGAa-CUGCGCUACcGGCU- -5'
26985 3' -55.3 NC_005809.1 + 8828 0.67 0.609176
Target:  5'- uGGUGUCGGCCUUGAuacCGUccucGCCGAc -3'
miRNA:   3'- -CCGUAGCUGGAACU---GCGcuacCGGCU- -5'
26985 3' -55.3 NC_005809.1 + 25908 0.67 0.609176
Target:  5'- aGGCGgguuUCGACUUgcagcuUGCGGUGGCCc- -3'
miRNA:   3'- -CCGU----AGCUGGAacu---GCGCUACCGGcu -5'
26985 3' -55.3 NC_005809.1 + 8460 0.67 0.598084
Target:  5'- cGGCGUCGAgg-UGGCcuGCGAUGccgcaGCCGAc -3'
miRNA:   3'- -CCGUAGCUggaACUG--CGCUAC-----CGGCU- -5'
26985 3' -55.3 NC_005809.1 + 18374 0.67 0.598084
Target:  5'- cGGCgagGUUGGCCUugccgaUGGCGCcGGUGGCgGc -3'
miRNA:   3'- -CCG---UAGCUGGA------ACUGCG-CUACCGgCu -5'
26985 3' -55.3 NC_005809.1 + 28318 0.67 0.598084
Target:  5'- cGGCGcgcUCGGCgUcgGACuCGAUGGCCu- -3'
miRNA:   3'- -CCGU---AGCUGgAa-CUGcGCUACCGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.