Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26985 | 5' | -57.5 | NC_005809.1 | + | 11562 | 0.66 | 0.552316 |
Target: 5'- cGgCCGGCAagCCCGUgGACAg-GUCGc -3' miRNA: 3'- -CgGGUCGUagGGGCGgCUGUagUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 11068 | 0.66 | 0.552316 |
Target: 5'- gGCCCAGCAgca-CGCCGGCggCAa-- -3' miRNA: 3'- -CGGGUCGUagggGCGGCUGuaGUagc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 37983 | 0.66 | 0.54159 |
Target: 5'- gGCCgAGCAguUCCUCGCCuGGCG-CAcCGa -3' miRNA: 3'- -CGGgUCGU--AGGGGCGG-CUGUaGUaGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 38238 | 0.66 | 0.54159 |
Target: 5'- cGgCCAGCAUCaagGCUGGCAcCAUCGu -3' miRNA: 3'- -CgGGUCGUAGgggCGGCUGUaGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 20598 | 0.66 | 0.530934 |
Target: 5'- cCUCGGUAUCCuUCGCCaGGCggCGUCGc -3' miRNA: 3'- cGGGUCGUAGG-GGCGG-CUGuaGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 25649 | 0.66 | 0.530934 |
Target: 5'- cCUCGGCGagUUCUGCCGGCGUCAUg- -3' miRNA: 3'- cGGGUCGUa-GGGGCGGCUGUAGUAgc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 19010 | 0.66 | 0.50986 |
Target: 5'- cGCCC-GCA--CCUGCCGGCGaUGUCGg -3' miRNA: 3'- -CGGGuCGUagGGGCGGCUGUaGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 28863 | 0.66 | 0.50986 |
Target: 5'- uCCCAGCG-CCgCGCC-ACGUCcUCGc -3' miRNA: 3'- cGGGUCGUaGGgGCGGcUGUAGuAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 7114 | 0.66 | 0.499455 |
Target: 5'- uCCaCGGUuUCCCCGCUcACGUCcgCGa -3' miRNA: 3'- cGG-GUCGuAGGGGCGGcUGUAGuaGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 4859 | 0.66 | 0.499455 |
Target: 5'- cGgCCAGCuuccaAUCCUCGCCGGCGagccacgcaaUCAUgCGu -3' miRNA: 3'- -CgGGUCG-----UAGGGGCGGCUGU----------AGUA-GC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 8180 | 0.66 | 0.499455 |
Target: 5'- cGCCCGGa--UgCUGCCGGCGauuUCAUCGc -3' miRNA: 3'- -CGGGUCguaGgGGCGGCUGU---AGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 7502 | 0.66 | 0.499455 |
Target: 5'- cGCCCAGCAggUUgCCGaggaUGGCGUUGUCu -3' miRNA: 3'- -CGGGUCGU--AGgGGCg---GCUGUAGUAGc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 25484 | 0.66 | 0.499455 |
Target: 5'- gGCCCGGCcgagaaCCgCGCCGGCuUCGccuUCGu -3' miRNA: 3'- -CGGGUCGua----GGgGCGGCUGuAGU---AGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 19037 | 0.67 | 0.489145 |
Target: 5'- aGCCCugguAGCGg--CCGCCGGCggCGUCGn -3' miRNA: 3'- -CGGG----UCGUaggGGCGGCUGuaGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 6136 | 0.67 | 0.488119 |
Target: 5'- uGCCCuuccaucAGCA-CCCacuCGCCGcCGUCAUCu -3' miRNA: 3'- -CGGG-------UCGUaGGG---GCGGCuGUAGUAGc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 26970 | 0.67 | 0.478935 |
Target: 5'- -gUCAGCAUCCUgGCCGAUggCG-CGg -3' miRNA: 3'- cgGGUCGUAGGGgCGGCUGuaGUaGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 24537 | 0.67 | 0.478935 |
Target: 5'- gGCCCccaAGCAg-CCCGCCGACAa----- -3' miRNA: 3'- -CGGG---UCGUagGGGCGGCUGUaguagc -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 19966 | 0.67 | 0.47792 |
Target: 5'- aCCCAGguUUCgggcaggCCGCCGAUGUCcgCGu -3' miRNA: 3'- cGGGUCguAGG-------GGCGGCUGUAGuaGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 33974 | 0.67 | 0.468832 |
Target: 5'- cGCCUAcGcCAUCCCCacggucGCCGugAcCGUCGu -3' miRNA: 3'- -CGGGU-C-GUAGGGG------CGGCugUaGUAGC- -5' |
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26985 | 5' | -57.5 | NC_005809.1 | + | 26250 | 0.67 | 0.468832 |
Target: 5'- cGCCgaaGGCAcgggCaCCCGCCGGCcUgGUCGg -3' miRNA: 3'- -CGGg--UCGUa---G-GGGCGGCUGuAgUAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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