miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26985 5' -57.5 NC_005809.1 + 33974 0.67 0.468832
Target:  5'- cGCCUAcGcCAUCCCCacggucGCCGugAcCGUCGu -3'
miRNA:   3'- -CGGGU-C-GUAGGGG------CGGCugUaGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 7787 0.67 0.465822
Target:  5'- cGCCCuGCgaggcgaugggcauGUCCCacuCGCUGAUAUgGUCGa -3'
miRNA:   3'- -CGGGuCG--------------UAGGG---GCGGCUGUAgUAGC- -5'
26985 5' -57.5 NC_005809.1 + 24594 0.67 0.458838
Target:  5'- cGUCCGGCguGUCCuuGCCGGgGUaggucagcggcaCGUCGa -3'
miRNA:   3'- -CGGGUCG--UAGGggCGGCUgUA------------GUAGC- -5'
26985 5' -57.5 NC_005809.1 + 22959 0.68 0.439199
Target:  5'- gGCCC-GCAUgaCCCCGgaCGGCAagAUCGa -3'
miRNA:   3'- -CGGGuCGUA--GGGGCg-GCUGUagUAGC- -5'
26985 5' -57.5 NC_005809.1 + 7768 0.68 0.429562
Target:  5'- aGCaCCGGCGcgaUCUgCGCCGGCGUCcacccuUCGc -3'
miRNA:   3'- -CG-GGUCGU---AGGgGCGGCUGUAGu-----AGC- -5'
26985 5' -57.5 NC_005809.1 + 40285 0.68 0.420049
Target:  5'- cCCCAGCAUCgaCCGCgCGGCAcuguacgcgaUgAUCGa -3'
miRNA:   3'- cGGGUCGUAGg-GGCG-GCUGU----------AgUAGC- -5'
26985 5' -57.5 NC_005809.1 + 11533 0.68 0.392295
Target:  5'- gGCCCugcgagcgGGCAUCCugauaggacugcCCGCCGG--UCAUCGa -3'
miRNA:   3'- -CGGG--------UCGUAGG------------GGCGGCUguAGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 15207 0.69 0.383312
Target:  5'- cGCCgauGGCgAUUUCCGCCGACAUCGa-- -3'
miRNA:   3'- -CGGg--UCG-UAGGGGCGGCUGUAGUagc -5'
26985 5' -57.5 NC_005809.1 + 5547 0.69 0.383312
Target:  5'- cGCCCAG-GUCgCCCGCC-ACggUAUCGa -3'
miRNA:   3'- -CGGGUCgUAG-GGGCGGcUGuaGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 12628 0.69 0.382421
Target:  5'- cGCUCGGCAUCgCUGCUGcCGUCcuuuggcGUCGg -3'
miRNA:   3'- -CGGGUCGUAGgGGCGGCuGUAG-------UAGC- -5'
26985 5' -57.5 NC_005809.1 + 34406 0.69 0.374467
Target:  5'- -gCCAGCGccUUCCUggGCCG-CAUCAUCGa -3'
miRNA:   3'- cgGGUCGU--AGGGG--CGGCuGUAGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 29405 0.69 0.365761
Target:  5'- cGCCCAGCGcggccgacaCUgGCCGACAUCGa-- -3'
miRNA:   3'- -CGGGUCGUag-------GGgCGGCUGUAGUagc -5'
26985 5' -57.5 NC_005809.1 + 27721 0.69 0.340492
Target:  5'- cGCCCAGCGUgCggcgcuggCCGCCaACggCAUCGa -3'
miRNA:   3'- -CGGGUCGUAgG--------GGCGGcUGuaGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 4304 0.69 0.340492
Target:  5'- cGCCCAuGUAggacagCuuGCCGGCGUCAUCc -3'
miRNA:   3'- -CGGGU-CGUag----GggCGGCUGUAGUAGc -5'
26985 5' -57.5 NC_005809.1 + 27430 0.7 0.32436
Target:  5'- cGCCCugggcGCAUCCgCCGCCaGCAUgggGUCGg -3'
miRNA:   3'- -CGGGu----CGUAGG-GGCGGcUGUAg--UAGC- -5'
26985 5' -57.5 NC_005809.1 + 19066 0.7 0.32436
Target:  5'- -aUCAGCguGUCCUCGCCGAgGUCAcgCGa -3'
miRNA:   3'- cgGGUCG--UAGGGGCGGCUgUAGUa-GC- -5'
26985 5' -57.5 NC_005809.1 + 189 0.7 0.293825
Target:  5'- -gCCGGCGucaUCCCCGCCaucaGCAUCAUgGu -3'
miRNA:   3'- cgGGUCGU---AGGGGCGGc---UGUAGUAgC- -5'
26985 5' -57.5 NC_005809.1 + 25936 0.7 0.293825
Target:  5'- gGCCCAGCAugUCCCgCGCUuGACcuuguagccGUCGUCc -3'
miRNA:   3'- -CGGGUCGU--AGGG-GCGG-CUG---------UAGUAGc -5'
26985 5' -57.5 NC_005809.1 + 818 0.71 0.279417
Target:  5'- cGCCCAGC--CCuuGCCGAa--CGUCGg -3'
miRNA:   3'- -CGGGUCGuaGGggCGGCUguaGUAGC- -5'
26985 5' -57.5 NC_005809.1 + 6396 0.72 0.252299
Target:  5'- cGCCgCGGCGcCCUCGgUGAUGUCGUCGa -3'
miRNA:   3'- -CGG-GUCGUaGGGGCgGCUGUAGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.