Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26986 | 5' | -56.9 | NC_005809.1 | + | 29826 | 0.66 | 0.525901 |
Target: 5'- -aGC---GCGC-CAAGCGUCUG-GGCg -3' miRNA: 3'- gaCGcuaCGCGaGUUCGCGGACaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 30081 | 0.69 | 0.35049 |
Target: 5'- uUGUGcgGCGCcCGGGCGCCac-GGCc -3' miRNA: 3'- gACGCuaCGCGaGUUCGCGGacaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 31979 | 0.7 | 0.317556 |
Target: 5'- aUGCGGUGCagGCUgc-GCGCCUG-GGUa -3' miRNA: 3'- gACGCUACG--CGAguuCGCGGACaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 35780 | 0.68 | 0.413746 |
Target: 5'- -aGCGAUGCGCaagUCAAgGCGCUgaaccaGGCc -3' miRNA: 3'- gaCGCUACGCG---AGUU-CGCGGaca---CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 38057 | 1.12 | 0.000265 |
Target: 5'- uCUGCGAUGCGCUCAAGCGCCUGUGGCg -3' miRNA: 3'- -GACGCUACGCGAGUUCGCGGACACCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 39307 | 0.66 | 0.547596 |
Target: 5'- -gGCGuUGCGCgggaaauguuccUgAAGUGCCUGcucgGGCa -3' miRNA: 3'- gaCGCuACGCG------------AgUUCGCGGACa---CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 39505 | 0.66 | 0.515175 |
Target: 5'- aUG-GGUGCgGCUCGGGCGCUUGacGUg -3' miRNA: 3'- gACgCUACG-CGAGUUCGCGGACacCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 39849 | 0.66 | 0.515175 |
Target: 5'- -cGgGccGCGCUCAAGCGUCc--GGCc -3' miRNA: 3'- gaCgCuaCGCGAGUUCGCGGacaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 40559 | 0.71 | 0.279738 |
Target: 5'- -cGCGAcuuCGCcagCGAGCGCCUG-GGCc -3' miRNA: 3'- gaCGCUac-GCGa--GUUCGCGGACaCCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 41756 | 0.67 | 0.463008 |
Target: 5'- uCUGCGc-GCGCUCAAGCccagccaCCUGcugacGGCg -3' miRNA: 3'- -GACGCuaCGCGAGUUCGc------GGACa----CCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 41889 | 0.7 | 0.309695 |
Target: 5'- -gGCGGcccggccgGCGCcgccgUAGGCGCCUgGUGGCu -3' miRNA: 3'- gaCGCUa-------CGCGa----GUUCGCGGA-CACCG- -5' |
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26986 | 5' | -56.9 | NC_005809.1 | + | 42312 | 0.72 | 0.226808 |
Target: 5'- -cGCcGUGC-CUCAAGCGCCUG-GGg -3' miRNA: 3'- gaCGcUACGcGAGUUCGCGGACaCCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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