miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26986 5' -56.9 NC_005809.1 + 250 0.67 0.452905
Target:  5'- -gGCGGUaGCGaaucccCAGGCGCUUGaGGCa -3'
miRNA:   3'- gaCGCUA-CGCga----GUUCGCGGACaCCG- -5'
26986 5' -56.9 NC_005809.1 + 4376 0.68 0.433068
Target:  5'- -gGCgGAUGCGCagcCAGGCGCCgucgcgccgGGCc -3'
miRNA:   3'- gaCG-CUACGCGa--GUUCGCGGaca------CCG- -5'
26986 5' -56.9 NC_005809.1 + 4506 0.69 0.376741
Target:  5'- -cGCGcgGCGCcaCAGGCGCUUGaGcGCa -3'
miRNA:   3'- gaCGCuaCGCGa-GUUCGCGGACaC-CG- -5'
26986 5' -56.9 NC_005809.1 + 4580 0.66 0.536711
Target:  5'- gCUGCucGGUGCGC-CAGGCGaggaaCUGcucGGCc -3'
miRNA:   3'- -GACG--CUACGCGaGUUCGCg----GACa--CCG- -5'
26986 5' -56.9 NC_005809.1 + 5033 0.68 0.404286
Target:  5'- -cGCGAUGCcccGCUCGauGGCGuCCUGcuUGaGCa -3'
miRNA:   3'- gaCGCUACG---CGAGU--UCGC-GGAC--AC-CG- -5'
26986 5' -56.9 NC_005809.1 + 7228 0.68 0.433068
Target:  5'- uCUGCGccGCGCUCAcccucGGCGa-UGUcGGCc -3'
miRNA:   3'- -GACGCuaCGCGAGU-----UCGCggACA-CCG- -5'
26986 5' -56.9 NC_005809.1 + 7545 0.66 0.547596
Target:  5'- -gGCGgcGUGCUCGaucugcGGCGCCaccGGCu -3'
miRNA:   3'- gaCGCuaCGCGAGU------UCGCGGacaCCG- -5'
26986 5' -56.9 NC_005809.1 + 8536 0.7 0.325566
Target:  5'- -gGCGAUGaaaCGCUCGAcagccGCGCCgaUGGCg -3'
miRNA:   3'- gaCGCUAC---GCGAGUU-----CGCGGacACCG- -5'
26986 5' -56.9 NC_005809.1 + 10886 0.71 0.272618
Target:  5'- -gGCGGUGCuGCagCAguuacuGGUGCUUGUGGCc -3'
miRNA:   3'- gaCGCUACG-CGa-GU------UCGCGGACACCG- -5'
26986 5' -56.9 NC_005809.1 + 12912 0.7 0.325566
Target:  5'- -gGCGAUGCGCUCGGccGCGCCcauaacGCu -3'
miRNA:   3'- gaCGCUACGCGAGUU--CGCGGacac--CG- -5'
26986 5' -56.9 NC_005809.1 + 13928 0.68 0.413746
Target:  5'- -gGCGAUGuCGCgc-AGCGCC-GUGGa -3'
miRNA:   3'- gaCGCUAC-GCGaguUCGCGGaCACCg -5'
26986 5' -56.9 NC_005809.1 + 15112 0.68 0.433068
Target:  5'- gUGCGcgGCGCgcuggCAuaccAGCGCCaG-GGCc -3'
miRNA:   3'- gACGCuaCGCGa----GU----UCGCGGaCaCCG- -5'
26986 5' -56.9 NC_005809.1 + 16253 0.75 0.150366
Target:  5'- -cGCGGUGCGCgUCAAgaccGUGCCUGUccguugauGGCa -3'
miRNA:   3'- gaCGCUACGCG-AGUU----CGCGGACA--------CCG- -5'
26986 5' -56.9 NC_005809.1 + 18375 0.66 0.547596
Target:  5'- -gGCGAgguugGC-CUUGccgauGGCGCCgGUGGCg -3'
miRNA:   3'- gaCGCUa----CGcGAGU-----UCGCGGaCACCG- -5'
26986 5' -56.9 NC_005809.1 + 19477 0.67 0.442924
Target:  5'- -aGCu-UGCGC-CAGGUGCCgGUGGg -3'
miRNA:   3'- gaCGcuACGCGaGUUCGCGGaCACCg -5'
26986 5' -56.9 NC_005809.1 + 22858 0.66 0.536711
Target:  5'- -gGCGAUGCGC---GGCGCCUcuauGCa -3'
miRNA:   3'- gaCGCUACGCGaguUCGCGGAcac-CG- -5'
26986 5' -56.9 NC_005809.1 + 25193 0.66 0.536711
Target:  5'- gUGCGucgGCGCgaugCAGGCauaCCUGUcgcaGGCg -3'
miRNA:   3'- gACGCua-CGCGa---GUUCGc--GGACA----CCG- -5'
26986 5' -56.9 NC_005809.1 + 26168 0.67 0.452905
Target:  5'- uCUGCGAUGCGgUCGcAGauuUCgGUGGCg -3'
miRNA:   3'- -GACGCUACGCgAGU-UCgc-GGaCACCG- -5'
26986 5' -56.9 NC_005809.1 + 28760 0.68 0.394963
Target:  5'- -cGCGGUGCGCUUcucGGCGCgcacGGCg -3'
miRNA:   3'- gaCGCUACGCGAGu--UCGCGgacaCCG- -5'
26986 5' -56.9 NC_005809.1 + 29602 0.77 0.109106
Target:  5'- -cGCGGUuugccaguuguccaGCGC-CGGGCGCUUGUGGCc -3'
miRNA:   3'- gaCGCUA--------------CGCGaGUUCGCGGACACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.