miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26986 5' -56.9 NC_005809.1 + 38057 1.12 0.000265
Target:  5'- uCUGCGAUGCGCUCAAGCGCCUGUGGCg -3'
miRNA:   3'- -GACGCUACGCGAGUUCGCGGACACCG- -5'
26986 5' -56.9 NC_005809.1 + 18375 0.66 0.547596
Target:  5'- -gGCGAgguugGC-CUUGccgauGGCGCCgGUGGCg -3'
miRNA:   3'- gaCGCUa----CGcGAGU-----UCGCGGaCACCG- -5'
26986 5' -56.9 NC_005809.1 + 39505 0.66 0.515175
Target:  5'- aUG-GGUGCgGCUCGGGCGCUUGacGUg -3'
miRNA:   3'- gACgCUACG-CGAGUUCGCGGACacCG- -5'
26986 5' -56.9 NC_005809.1 + 39849 0.66 0.515175
Target:  5'- -cGgGccGCGCUCAAGCGUCc--GGCc -3'
miRNA:   3'- gaCgCuaCGCGAGUUCGCGGacaCCG- -5'
26986 5' -56.9 NC_005809.1 + 41756 0.67 0.463008
Target:  5'- uCUGCGc-GCGCUCAAGCccagccaCCUGcugacGGCg -3'
miRNA:   3'- -GACGCuaCGCGAGUUCGc------GGACa----CCG- -5'
26986 5' -56.9 NC_005809.1 + 26168 0.67 0.452905
Target:  5'- uCUGCGAUGCGgUCGcAGauuUCgGUGGCg -3'
miRNA:   3'- -GACGCUACGCgAGU-UCgc-GGaCACCG- -5'
26986 5' -56.9 NC_005809.1 + 19477 0.67 0.442924
Target:  5'- -aGCu-UGCGC-CAGGUGCCgGUGGg -3'
miRNA:   3'- gaCGcuACGCGaGUUCGCGGaCACCg -5'
26986 5' -56.9 NC_005809.1 + 7228 0.68 0.433068
Target:  5'- uCUGCGccGCGCUCAcccucGGCGa-UGUcGGCc -3'
miRNA:   3'- -GACGCuaCGCGAGU-----UCGCggACA-CCG- -5'
26986 5' -56.9 NC_005809.1 + 13928 0.68 0.413746
Target:  5'- -gGCGAUGuCGCgc-AGCGCC-GUGGa -3'
miRNA:   3'- gaCGCUAC-GCGaguUCGCGGaCACCg -5'
26986 5' -56.9 NC_005809.1 + 29602 0.77 0.109106
Target:  5'- -cGCGGUuugccaguuguccaGCGC-CGGGCGCUUGUGGCc -3'
miRNA:   3'- gaCGCUA--------------CGCGaGUUCGCGGACACCG- -5'
26986 5' -56.9 NC_005809.1 + 42312 0.72 0.226808
Target:  5'- -cGCcGUGC-CUCAAGCGCCUG-GGg -3'
miRNA:   3'- gaCGcUACGcGAGUUCGCGGACaCCg -5'
26986 5' -56.9 NC_005809.1 + 12912 0.7 0.325566
Target:  5'- -gGCGAUGCGCUCGGccGCGCCcauaacGCu -3'
miRNA:   3'- gaCGCUACGCGAGUU--CGCGGacac--CG- -5'
26986 5' -56.9 NC_005809.1 + 30081 0.69 0.35049
Target:  5'- uUGUGcgGCGCcCGGGCGCCac-GGCc -3'
miRNA:   3'- gACGCuaCGCGaGUUCGCGGacaCCG- -5'
26986 5' -56.9 NC_005809.1 + 28760 0.68 0.394963
Target:  5'- -cGCGGUGCGCUUcucGGCGCgcacGGCg -3'
miRNA:   3'- gaCGCUACGCGAGu--UCGCGgacaCCG- -5'
26986 5' -56.9 NC_005809.1 + 35780 0.68 0.413746
Target:  5'- -aGCGAUGCGCaagUCAAgGCGCUgaaccaGGCc -3'
miRNA:   3'- gaCGCUACGCG---AGUU-CGCGGaca---CCG- -5'
26986 5' -56.9 NC_005809.1 + 39307 0.66 0.547596
Target:  5'- -gGCGuUGCGCgggaaauguuccUgAAGUGCCUGcucgGGCa -3'
miRNA:   3'- gaCGCuACGCG------------AgUUCGCGGACa---CCG- -5'
26986 5' -56.9 NC_005809.1 + 10886 0.71 0.272618
Target:  5'- -gGCGGUGCuGCagCAguuacuGGUGCUUGUGGCc -3'
miRNA:   3'- gaCGCUACG-CGa-GU------UCGCGGACACCG- -5'
26986 5' -56.9 NC_005809.1 + 40559 0.71 0.279738
Target:  5'- -cGCGAcuuCGCcagCGAGCGCCUG-GGCc -3'
miRNA:   3'- gaCGCUac-GCGa--GUUCGCGGACaCCG- -5'
26986 5' -56.9 NC_005809.1 + 41889 0.7 0.309695
Target:  5'- -gGCGGcccggccgGCGCcgccgUAGGCGCCUgGUGGCu -3'
miRNA:   3'- gaCGCUa-------CGCGa----GUUCGCGGA-CACCG- -5'
26986 5' -56.9 NC_005809.1 + 31979 0.7 0.317556
Target:  5'- aUGCGGUGCagGCUgc-GCGCCUG-GGUa -3'
miRNA:   3'- gACGCUACG--CGAguuCGCGGACaCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.