miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26987 3' -56.3 NC_005809.1 + 13884 0.69 0.380148
Target:  5'- gACCUugugaACGACgugGCgCGcCGCGCUggCGAGGCc -3'
miRNA:   3'- -UGGA-----UGCUGa--CG-GC-GUGCGA--GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 14328 0.66 0.584522
Target:  5'- cGCCUugGcugaACUGCCgggccuGCugGUUCGcGGUg -3'
miRNA:   3'- -UGGAugC----UGACGG------CGugCGAGUuCCG- -5'
26987 3' -56.3 NC_005809.1 + 14846 0.77 0.128527
Target:  5'- uGCCguugGCGGCcagcGCCGCACGCU--GGGCg -3'
miRNA:   3'- -UGGa---UGCUGa---CGGCGUGCGAguUCCG- -5'
26987 3' -56.3 NC_005809.1 + 15142 0.79 0.083511
Target:  5'- gGCCUGCGGCcGCCGgGCGCggugCGccAGGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCgUGCGa---GU--UCCG- -5'
26987 3' -56.3 NC_005809.1 + 16107 0.68 0.476981
Target:  5'- gACC-ACGACcgGCUGCACG-UCGGuGGCc -3'
miRNA:   3'- -UGGaUGCUGa-CGGCGUGCgAGUU-CCG- -5'
26987 3' -56.3 NC_005809.1 + 16137 0.71 0.289173
Target:  5'- gACgUAgGACUgcgGCCGCACGCUgAuggugguGGGCg -3'
miRNA:   3'- -UGgAUgCUGA---CGGCGUGCGAgU-------UCCG- -5'
26987 3' -56.3 NC_005809.1 + 16732 0.66 0.540578
Target:  5'- cCCUuguuguuCGACgugGCgGuCACGCUCGuGGGCg -3'
miRNA:   3'- uGGAu------GCUGa--CGgC-GUGCGAGU-UCCG- -5'
26987 3' -56.3 NC_005809.1 + 17269 0.75 0.170082
Target:  5'- cGCCggugGCagGGCcgGCCGCACGacCUCAAGGCa -3'
miRNA:   3'- -UGGa---UG--CUGa-CGGCGUGC--GAGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 18282 0.67 0.50836
Target:  5'- gACCUcaccgcccccACGuggucACUGuCCGgcgcCACGCUCAAGGUg -3'
miRNA:   3'- -UGGA----------UGC-----UGAC-GGC----GUGCGAGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 18383 0.69 0.383764
Target:  5'- cGCCUACGuGCUcgcgcucauggacacGCCgaaGCGCGCagccgUCGAGGCg -3'
miRNA:   3'- -UGGAUGC-UGA---------------CGG---CGUGCG-----AGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 18831 0.77 0.12493
Target:  5'- cGCCggcaugGCG-CUGCUGCGCGCcacCGAGGCa -3'
miRNA:   3'- -UGGa-----UGCuGACGGCGUGCGa--GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 19153 0.69 0.37121
Target:  5'- gGCCgGCGucgcACUGaCCgGCGCGCUCAucaAGGUa -3'
miRNA:   3'- -UGGaUGC----UGAC-GG-CGUGCGAGU---UCCG- -5'
26987 3' -56.3 NC_005809.1 + 19391 0.74 0.184721
Target:  5'- gACCUGCuGCUGUCGCACcaGCagGGGGCc -3'
miRNA:   3'- -UGGAUGcUGACGGCGUG--CGagUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 19474 0.73 0.241761
Target:  5'- cGCCguggGCG-CcGCCGUugGCgUCGGGGCg -3'
miRNA:   3'- -UGGa---UGCuGaCGGCGugCG-AGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 19871 0.71 0.320652
Target:  5'- aACCgaGCGcaaACUGCUGCuuucGCGCUgGGGGCa -3'
miRNA:   3'- -UGGa-UGC---UGACGGCG----UGCGAgUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 19957 0.77 0.114695
Target:  5'- -aCUACuGCUGCCGCGCGCg--GGGCg -3'
miRNA:   3'- ugGAUGcUGACGGCGUGCGaguUCCG- -5'
26987 3' -56.3 NC_005809.1 + 20450 0.66 0.573453
Target:  5'- aGCCUGuuCGACcGCgGCGCGCUgGaacaguGGGUu -3'
miRNA:   3'- -UGGAU--GCUGaCGgCGUGCGAgU------UCCG- -5'
26987 3' -56.3 NC_005809.1 + 20882 0.67 0.50836
Target:  5'- aACCU-CGAcCUGUCGCAC-CUUcuGGCu -3'
miRNA:   3'- -UGGAuGCU-GACGGCGUGcGAGuuCCG- -5'
26987 3' -56.3 NC_005809.1 + 21966 0.7 0.353768
Target:  5'- gACCUGCGAC-GCCGcCugGCg-AAGGa -3'
miRNA:   3'- -UGGAUGCUGaCGGC-GugCGagUUCCg -5'
26987 3' -56.3 NC_005809.1 + 23504 0.69 0.41731
Target:  5'- gACCUGCGGCaguuccGCgaGCGCGCcuUCcAGGCg -3'
miRNA:   3'- -UGGAUGCUGa-----CGg-CGUGCG--AGuUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.