miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26987 3' -56.3 NC_005809.1 + 165 0.66 0.551473
Target:  5'- uGCCcaa-GCUGCCGCGCGCagAAugccGGCg -3'
miRNA:   3'- -UGGaugcUGACGGCGUGCGagUU----CCG- -5'
26987 3' -56.3 NC_005809.1 + 444 0.66 0.540578
Target:  5'- uCgUugGGCUGCUGCGCggccaGCUUGcGGGCg -3'
miRNA:   3'- uGgAugCUGACGGCGUG-----CGAGU-UCCG- -5'
26987 3' -56.3 NC_005809.1 + 4025 0.68 0.456603
Target:  5'- cACCaGCGucaUGCCGCGCgGgUCGAGcGCa -3'
miRNA:   3'- -UGGaUGCug-ACGGCGUG-CgAGUUC-CG- -5'
26987 3' -56.3 NC_005809.1 + 4549 0.66 0.551473
Target:  5'- gUCUugGGCUugagGCCGaaguCGC-CGAGGCg -3'
miRNA:   3'- uGGAugCUGA----CGGCgu--GCGaGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 4631 0.68 0.466734
Target:  5'- gGCCcGCG-CUGCCGCAgGgUC--GGCa -3'
miRNA:   3'- -UGGaUGCuGACGGCGUgCgAGuuCCG- -5'
26987 3' -56.3 NC_005809.1 + 4936 0.69 0.407812
Target:  5'- uGCCcGCGACgGuCUGCACGUcugCGAGGUu -3'
miRNA:   3'- -UGGaUGCUGaC-GGCGUGCGa--GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 5286 0.69 0.407812
Target:  5'- aGCgU-CGAUUGCUGCAUGUcuggcaggUCGAGGCc -3'
miRNA:   3'- -UGgAuGCUGACGGCGUGCG--------AGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 7155 0.69 0.38923
Target:  5'- gGCCUggAUGACcaggGCCGgGCGCUUgucggauucgGGGGCg -3'
miRNA:   3'- -UGGA--UGCUGa---CGGCgUGCGAG----------UUCCG- -5'
26987 3' -56.3 NC_005809.1 + 7514 0.66 0.540578
Target:  5'- uGCCgaggAUGGCguugucuaCCGUGCGCUCGGcGGCg -3'
miRNA:   3'- -UGGa---UGCUGac------GGCGUGCGAGUU-CCG- -5'
26987 3' -56.3 NC_005809.1 + 7715 0.73 0.223252
Target:  5'- uGCCgAUGaACUGCagCGCACGCUCGGcGGCc -3'
miRNA:   3'- -UGGaUGC-UGACG--GCGUGCGAGUU-CCG- -5'
26987 3' -56.3 NC_005809.1 + 8406 0.68 0.436702
Target:  5'- aGCCaguCGGCcaggGCCGUGCGCUUgucuacggccuuGAGGCu -3'
miRNA:   3'- -UGGau-GCUGa---CGGCGUGCGAG------------UUCCG- -5'
26987 3' -56.3 NC_005809.1 + 8472 0.68 0.456603
Target:  5'- gGCCUGCGA-UGCCGCA-GC-CGAcGCg -3'
miRNA:   3'- -UGGAUGCUgACGGCGUgCGaGUUcCG- -5'
26987 3' -56.3 NC_005809.1 + 8677 0.66 0.573453
Target:  5'- ---aGCGGCUGCUGCGcCGCcCAGGuGUg -3'
miRNA:   3'- uggaUGCUGACGGCGU-GCGaGUUC-CG- -5'
26987 3' -56.3 NC_005809.1 + 8903 0.66 0.562434
Target:  5'- ---aAUGGCgcuaucgGCgGCGCGCUCGAuGGCu -3'
miRNA:   3'- uggaUGCUGa------CGgCGUGCGAGUU-CCG- -5'
26987 3' -56.3 NC_005809.1 + 9202 0.68 0.476981
Target:  5'- gGCCUgcucgGCGGCgcGgCGCACGUUCugcGGCg -3'
miRNA:   3'- -UGGA-----UGCUGa-CgGCGUGCGAGuu-CCG- -5'
26987 3' -56.3 NC_005809.1 + 11331 0.68 0.446591
Target:  5'- cGCC--CGGCUcguagcuggGCCGCGCGC-CGGGGUu -3'
miRNA:   3'- -UGGauGCUGA---------CGGCGUGCGaGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 11492 0.66 0.537323
Target:  5'- cGCCUGCGACa-CCGCaaagggcagcgccuGCGCUggcgUGAGGCc -3'
miRNA:   3'- -UGGAUGCUGacGGCG--------------UGCGA----GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 12478 0.67 0.519014
Target:  5'- cGCCUGgGACaaggGCCGUgGCGC-CcGGGCg -3'
miRNA:   3'- -UGGAUgCUGa---CGGCG-UGCGaGuUCCG- -5'
26987 3' -56.3 NC_005809.1 + 13094 0.66 0.592295
Target:  5'- gACCgacGCGGaacugGCCGCGCGCUucgucgccuggugcCAGGaGCa -3'
miRNA:   3'- -UGGa--UGCUga---CGGCGUGCGA--------------GUUC-CG- -5'
26987 3' -56.3 NC_005809.1 + 13758 0.66 0.595632
Target:  5'- aACCcgACGACgGCgCGCugGCugcUCAAgaucGGCa -3'
miRNA:   3'- -UGGa-UGCUGaCG-GCGugCG---AGUU----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.