miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26987 3' -56.3 NC_005809.1 + 38163 1.1 0.000427
Target:  5'- gACCUACGACUGCCGCACGCUCAAGGCc -3'
miRNA:   3'- -UGGAUGCUGACGGCGUGCGAGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 15142 0.79 0.083511
Target:  5'- gGCCUGCGGCcGCCGgGCGCggugCGccAGGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCgUGCGa---GU--UCCG- -5'
26987 3' -56.3 NC_005809.1 + 19957 0.77 0.114695
Target:  5'- -aCUACuGCUGCCGCGCGCg--GGGCg -3'
miRNA:   3'- ugGAUGcUGACGGCGUGCGaguUCCG- -5'
26987 3' -56.3 NC_005809.1 + 18831 0.77 0.12493
Target:  5'- cGCCggcaugGCG-CUGCUGCGCGCcacCGAGGCa -3'
miRNA:   3'- -UGGa-----UGCuGACGGCGUGCGa--GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 14846 0.77 0.128527
Target:  5'- uGCCguugGCGGCcagcGCCGCACGCU--GGGCg -3'
miRNA:   3'- -UGGa---UGCUGa---CGGCGUGCGAguUCCG- -5'
26987 3' -56.3 NC_005809.1 + 41464 0.76 0.152181
Target:  5'- gGCCgaugcGCGACaUGCCGCGCGacacggcCAAGGCa -3'
miRNA:   3'- -UGGa----UGCUG-ACGGCGUGCga-----GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 24163 0.75 0.15649
Target:  5'- cGCCU-CGACgGCUGCGCGCUUc-GGCg -3'
miRNA:   3'- -UGGAuGCUGaCGGCGUGCGAGuuCCG- -5'
26987 3' -56.3 NC_005809.1 + 17269 0.75 0.170082
Target:  5'- cGCCggugGCagGGCcgGCCGCACGacCUCAAGGCa -3'
miRNA:   3'- -UGGa---UG--CUGa-CGGCGUGC--GAGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 19391 0.74 0.184721
Target:  5'- gACCUGCuGCUGUCGCACcaGCagGGGGCc -3'
miRNA:   3'- -UGGAUGcUGACGGCGUG--CGagUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 26502 0.74 0.184721
Target:  5'- cAUCUACGGC-GCCGCGCGCggc-GGCc -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCGaguuCCG- -5'
26987 3' -56.3 NC_005809.1 + 32922 0.74 0.205962
Target:  5'- gGCCUgcACGGCUGCUGUucgGC-CAGGGCg -3'
miRNA:   3'- -UGGA--UGCUGACGGCGug-CGaGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 35217 0.73 0.211593
Target:  5'- gACgaACGAC-GCCGaggucgaggcCGCGCUCAAGGCc -3'
miRNA:   3'- -UGgaUGCUGaCGGC----------GUGCGAGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 7715 0.73 0.223252
Target:  5'- uGCCgAUGaACUGCagCGCACGCUCGGcGGCc -3'
miRNA:   3'- -UGGaUGC-UGACG--GCGUGCGAGUU-CCG- -5'
26987 3' -56.3 NC_005809.1 + 19474 0.73 0.241761
Target:  5'- cGCCguggGCG-CcGCCGUugGCgUCGGGGCg -3'
miRNA:   3'- -UGGa---UGCuGaCGGCGugCG-AGUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 38074 0.72 0.248209
Target:  5'- cGCCUGUGGC-GCCGCGCGCaUCc-GGCg -3'
miRNA:   3'- -UGGAUGCUGaCGGCGUGCG-AGuuCCG- -5'
26987 3' -56.3 NC_005809.1 + 16137 0.71 0.289173
Target:  5'- gACgUAgGACUgcgGCCGCACGCUgAuggugguGGGCg -3'
miRNA:   3'- -UGgAUgCUGA---CGGCGUGCGAgU-------UCCG- -5'
26987 3' -56.3 NC_005809.1 + 39172 0.71 0.304985
Target:  5'- cGCCUACGAaaaugGCCGCGugugggUGCUCAAGa- -3'
miRNA:   3'- -UGGAUGCUga---CGGCGU------GCGAGUUCcg -5'
26987 3' -56.3 NC_005809.1 + 29103 0.71 0.304985
Target:  5'- gGCCcgUGCGggacuuGCUGCCGguCACGCgcgCGAGGCc -3'
miRNA:   3'- -UGG--AUGC------UGACGGC--GUGCGa--GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 34456 0.71 0.312744
Target:  5'- aACCaACGcCgGCCGCGCGgUgCAGGGCc -3'
miRNA:   3'- -UGGaUGCuGaCGGCGUGCgA-GUUCCG- -5'
26987 3' -56.3 NC_005809.1 + 19871 0.71 0.320652
Target:  5'- aACCgaGCGcaaACUGCUGCuuucGCGCUgGGGGCa -3'
miRNA:   3'- -UGGa-UGC---UGACGGCG----UGCGAgUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.