Results 1 - 20 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 22011 | 0.66 | 0.288051 |
Target: 5'- uCGGCGCCUGGCucgaaauagaccgacUuccacgccauguuGCGguCGUCgCGCUUGCu -3' miRNA: 3'- -GCCGCGGACCG---------------A-------------CGC--GUAG-GCGGACG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 3869 | 0.66 | 0.278987 |
Target: 5'- aGGCGCCgucGCUGUagg-CCGCgCUGCc -3' miRNA: 3'- gCCGCGGac-CGACGcguaGGCG-GACG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 14323 | 0.66 | 0.285939 |
Target: 5'- gCGcGCGCCuUGGCUGaacugCCggGCCUGCu -3' miRNA: 3'- -GC-CGCGG-ACCGACgcguaGG--CGGACG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 3184 | 0.66 | 0.285939 |
Target: 5'- cCGGCGUCc-GCUGCGUAca-GCUUGCu -3' miRNA: 3'- -GCCGCGGacCGACGCGUaggCGGACG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 18064 | 0.66 | 0.285939 |
Target: 5'- cCGGCGCg-GGgUGCGUgcugggCCGCCgaagccgGCg -3' miRNA: 3'- -GCCGCGgaCCgACGCGua----GGCGGa------CG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 30472 | 0.66 | 0.285939 |
Target: 5'- gGGCGCC-GGUcauCGCGUCa-CCUGCu -3' miRNA: 3'- gCCGCGGaCCGac-GCGUAGgcGGACG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 24363 | 0.66 | 0.285939 |
Target: 5'- uCGG-GUCgagGGCUucGCGCAUUCGCCaccacaacucgcUGCg -3' miRNA: 3'- -GCCgCGGa--CCGA--CGCGUAGGCGG------------ACG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 31176 | 0.66 | 0.285939 |
Target: 5'- cCGGUGaagcaCgGGCcGCGCAcguUCUGCCUGa -3' miRNA: 3'- -GCCGCg----GaCCGaCGCGU---AGGCGGACg -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 41214 | 0.66 | 0.265488 |
Target: 5'- uCGGuCGCC-GGaUGCGCAaggCCGCCgaccacgGCu -3' miRNA: 3'- -GCC-GCGGaCCgACGCGUa--GGCGGa------CG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 12140 | 0.66 | 0.272171 |
Target: 5'- -cGCGCCacgcGCUGCGCuUCCGCguagGCg -3' miRNA: 3'- gcCGCGGac--CGACGCGuAGGCGga--CG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 4515 | 0.66 | 0.272171 |
Target: 5'- gCGGCGCCcgugaacgUGGCgUGCuggGCGgucgugCCGCC-GCg -3' miRNA: 3'- -GCCGCGG--------ACCG-ACG---CGUa-----GGCGGaCG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 23947 | 0.66 | 0.25894 |
Target: 5'- aGGCGCCgcccGGCgagGUcgGCAUuuGCCgauucaUGCg -3' miRNA: 3'- gCCGCGGa---CCGa--CG--CGUAggCGG------ACG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 41888 | 0.66 | 0.278987 |
Target: 5'- gGGCgGCCcGGCcgGCGCcgCCGUagGCg -3' miRNA: 3'- gCCG-CGGaCCGa-CGCGuaGGCGgaCG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 37906 | 0.66 | 0.265488 |
Target: 5'- cCGGCGCgCUGGUgccCGCAacaaccugUCCGaucuugccgacCCUGCg -3' miRNA: 3'- -GCCGCG-GACCGac-GCGU--------AGGC-----------GGACG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 42083 | 0.66 | 0.25894 |
Target: 5'- gCGGCGCaguauGCUGCcgagGCAUCCGaCC-GCg -3' miRNA: 3'- -GCCGCGgac--CGACG----CGUAGGC-GGaCG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 14748 | 0.66 | 0.258292 |
Target: 5'- cCGGCGCCaccgcgGGCaGCGCGcgcgaggacgugcUgCGgCUGCg -3' miRNA: 3'- -GCCGCGGa-----CCGaCGCGU-------------AgGCgGACG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 18839 | 0.66 | 0.285939 |
Target: 5'- uGGCGCU--GCUGCGCG-CCaCCgagGCa -3' miRNA: 3'- gCCGCGGacCGACGCGUaGGcGGa--CG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 16429 | 0.66 | 0.272171 |
Target: 5'- aCGGCGagccGCUGCGCcaaAUCUGCC-GCg -3' miRNA: 3'- -GCCGCggacCGACGCG---UAGGCGGaCG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 6294 | 0.66 | 0.2783 |
Target: 5'- gGGCGCCggGGCUuaucuccggugcGUGCAagacgcggcgcguUCCGCCccaGCc -3' miRNA: 3'- gCCGCGGa-CCGA------------CGCGU-------------AGGCGGa--CG- -5' |
|||||||
26987 | 5' | -62.8 | NC_005809.1 | + | 10086 | 0.66 | 0.293027 |
Target: 5'- uCGGC-CUUGGauucggGCGCAUCgGCC-GCc -3' miRNA: 3'- -GCCGcGGACCga----CGCGUAGgCGGaCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home