miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26987 5' -62.8 NC_005809.1 + 38198 1.1 0.000101
Target:  5'- aCGGCGCCUGGCUGCGCAUCCGCCUGCc -3'
miRNA:   3'- -GCCGCGGACCGACGCGUAGGCGGACG- -5'
26987 5' -62.8 NC_005809.1 + 42398 0.82 0.017005
Target:  5'- aCGGUGCCcaGCgacaccgggGCGCAUCCGCCUGCg -3'
miRNA:   3'- -GCCGCGGacCGa--------CGCGUAGGCGGACG- -5'
26987 5' -62.8 NC_005809.1 + 5337 0.78 0.03587
Target:  5'- uGGCGCagcaUGGCaucgcgcUGCGUggCCGCCUGCa -3'
miRNA:   3'- gCCGCGg---ACCG-------ACGCGuaGGCGGACG- -5'
26987 5' -62.8 NC_005809.1 + 13188 0.76 0.04787
Target:  5'- gGGCGCCcuUGGCcgGCGUuguaCGCCUGCa -3'
miRNA:   3'- gCCGCGG--ACCGa-CGCGuag-GCGGACG- -5'
26987 5' -62.8 NC_005809.1 + 17294 0.76 0.050674
Target:  5'- cCGGCGCCgcgGGC-GCGCAUCCauuCCgGCa -3'
miRNA:   3'- -GCCGCGGa--CCGaCGCGUAGGc--GGaCG- -5'
26987 5' -62.8 NC_005809.1 + 39742 0.75 0.060076
Target:  5'- uGGCGCC--GCUGCGCGUggCCGCgaGCa -3'
miRNA:   3'- gCCGCGGacCGACGCGUA--GGCGgaCG- -5'
26987 5' -62.8 NC_005809.1 + 13354 0.73 0.081869
Target:  5'- uCGGCGgaCUGGaCgccaugcGCGCGUCCGaCCUGCc -3'
miRNA:   3'- -GCCGCg-GACC-Ga------CGCGUAGGC-GGACG- -5'
26987 5' -62.8 NC_005809.1 + 9311 0.73 0.084189
Target:  5'- uCGGCGaCCUGGCgGCGCAcgUCgGCgCgGCg -3'
miRNA:   3'- -GCCGC-GGACCGaCGCGU--AGgCG-GaCG- -5'
26987 5' -62.8 NC_005809.1 + 27828 0.72 0.096758
Target:  5'- uGcGCGCCaauGCUGCGCGUaCUGCCUGg -3'
miRNA:   3'- gC-CGCGGac-CGACGCGUA-GGCGGACg -5'
26987 5' -62.8 NC_005809.1 + 10035 0.71 0.113869
Target:  5'- cCGGCGgcagcauCCUGGCcG-GCAUCaccaGCCUGCa -3'
miRNA:   3'- -GCCGC-------GGACCGaCgCGUAGg---CGGACG- -5'
26987 5' -62.8 NC_005809.1 + 33890 0.71 0.120615
Target:  5'- gCGGCGCacaccugGGCgGCGCAgcagCCG-CUGCa -3'
miRNA:   3'- -GCCGCGga-----CCGaCGCGUa---GGCgGACG- -5'
26987 5' -62.8 NC_005809.1 + 8575 0.71 0.127384
Target:  5'- gGGCGUCguaGGCcGCGCGUgCgGCCUGg -3'
miRNA:   3'- gCCGCGGa--CCGaCGCGUA-GgCGGACg -5'
26987 5' -62.8 NC_005809.1 + 16119 0.71 0.127384
Target:  5'- aCGGaUGCCgaGGUcgaGCGCAUCCGCgaaCUGCa -3'
miRNA:   3'- -GCC-GCGGa-CCGa--CGCGUAGGCG---GACG- -5'
26987 5' -62.8 NC_005809.1 + 15116 0.71 0.127384
Target:  5'- gCGGCGCgCUGGCauaccaGCGCcaggGCCUGCg -3'
miRNA:   3'- -GCCGCG-GACCGa-----CGCGuaggCGGACG- -5'
26987 5' -62.8 NC_005809.1 + 37464 0.71 0.130899
Target:  5'- aCGGCGCCaGccgcaccggacGCUGgGCcggCCGCCUGUu -3'
miRNA:   3'- -GCCGCGGaC-----------CGACgCGua-GGCGGACG- -5'
26987 5' -62.8 NC_005809.1 + 32794 0.71 0.130899
Target:  5'- uCGGCaCCUcgcugGuGCUGCGCGUCUGCCgGUc -3'
miRNA:   3'- -GCCGcGGA-----C-CGACGCGUAGGCGGaCG- -5'
26987 5' -62.8 NC_005809.1 + 33541 0.7 0.138198
Target:  5'- uCGGCuuuacGUCUGGUgacgaacugGUGCG-CCGCCUGCu -3'
miRNA:   3'- -GCCG-----CGGACCGa--------CGCGUaGGCGGACG- -5'
26987 5' -62.8 NC_005809.1 + 23992 0.7 0.141987
Target:  5'- uCGGCGCacagaCUGGCgaagguggGCGCGUCgGCCa-- -3'
miRNA:   3'- -GCCGCG-----GACCGa-------CGCGUAGgCGGacg -5'
26987 5' -62.8 NC_005809.1 + 28738 0.7 0.141987
Target:  5'- aGGCGCaauuGCUGgGCAaaUCCGCCgagugGCa -3'
miRNA:   3'- gCCGCGgac-CGACgCGU--AGGCGGa----CG- -5'
26987 5' -62.8 NC_005809.1 + 22235 0.7 0.149447
Target:  5'- gCGGC-CCUGGUUgucggccgcgaugGCGUAUUCGCCgGCc -3'
miRNA:   3'- -GCCGcGGACCGA-------------CGCGUAGGCGGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.