miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26988 5' -57.3 NC_005809.1 + 6176 0.72 0.202721
Target:  5'- aGCGCAGGCCGgucuuGCCGCaGCGUuuGCa -3'
miRNA:   3'- aUGCGUUCGGCguu--CGGCGcUGCA--CG- -5'
26988 5' -57.3 NC_005809.1 + 35485 0.72 0.207707
Target:  5'- cGCGUggGCgCGCcguggguAGGCCGCGGCGUc- -3'
miRNA:   3'- aUGCGuuCG-GCG-------UUCGGCGCUGCAcg -5'
26988 5' -57.3 NC_005809.1 + 22526 0.72 0.213945
Target:  5'- cGCaGCGAGCaCGCGcAGCgCGCG-CGUGCc -3'
miRNA:   3'- aUG-CGUUCG-GCGU-UCG-GCGCuGCACG- -5'
26988 5' -57.3 NC_005809.1 + 25760 0.72 0.213945
Target:  5'- gGCGCGcugcugggcGGCgGCAacgauGGCCGCGAUGcGCg -3'
miRNA:   3'- aUGCGU---------UCGgCGU-----UCGGCGCUGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 14870 0.72 0.213945
Target:  5'- gGCgGCGAGCCGCugccGGCgCGCGGCcUGUa -3'
miRNA:   3'- aUG-CGUUCGGCGu---UCG-GCGCUGcACG- -5'
26988 5' -57.3 NC_005809.1 + 33243 0.72 0.213945
Target:  5'- gAUGCc-GCCGCccGCCGCGccgACGUGCg -3'
miRNA:   3'- aUGCGuuCGGCGuuCGGCGC---UGCACG- -5'
26988 5' -57.3 NC_005809.1 + 4426 0.72 0.219754
Target:  5'- -uCGUAGGUCGUAcccGGCCGCaacaccgccaGGCGUGCg -3'
miRNA:   3'- auGCGUUCGGCGU---UCGGCG----------CUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 28077 0.72 0.219754
Target:  5'- --aGCGGGCaGguGGCCGCGGCGUcGUa -3'
miRNA:   3'- augCGUUCGgCguUCGGCGCUGCA-CG- -5'
26988 5' -57.3 NC_005809.1 + 13996 0.72 0.225697
Target:  5'- cACGCu-GCCGguGGCCG--ACGUGCg -3'
miRNA:   3'- aUGCGuuCGGCguUCGGCgcUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 27428 0.72 0.231776
Target:  5'- gGCGCAccgcgcccggcGGCCGCAGGCCcUGGCGcUGg -3'
miRNA:   3'- aUGCGU-----------UCGGCGUUCGGcGCUGC-ACg -5'
26988 5' -57.3 NC_005809.1 + 28444 0.72 0.231776
Target:  5'- aAgGCAAGCCGCuGGCCGaCGAguaCG-GCg -3'
miRNA:   3'- aUgCGUUCGGCGuUCGGC-GCU---GCaCG- -5'
26988 5' -57.3 NC_005809.1 + 35025 0.72 0.231776
Target:  5'- gUACGacccGGCCGCGAGCCa--GCGUGCg -3'
miRNA:   3'- -AUGCgu--UCGGCGUUCGGcgcUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 27794 0.71 0.244347
Target:  5'- aGCGCGcGCCGCGcAGCCGCaGcACGUccucGCg -3'
miRNA:   3'- aUGCGUuCGGCGU-UCGGCG-C-UGCA----CG- -5'
26988 5' -57.3 NC_005809.1 + 15078 0.71 0.25748
Target:  5'- gGCgGCcgAGGCCGCcGGCauccuCGCGugGUGCg -3'
miRNA:   3'- aUG-CG--UUCGGCGuUCG-----GCGCugCACG- -5'
26988 5' -57.3 NC_005809.1 + 7250 0.71 0.264261
Target:  5'- gGCGCGGGCCGau-GUCGCcGGCcuuGUGCa -3'
miRNA:   3'- aUGCGUUCGGCguuCGGCG-CUG---CACG- -5'
26988 5' -57.3 NC_005809.1 + 30304 0.71 0.264261
Target:  5'- aGCGCcc-CUGCGAGCCGCuuuGCGUGUa -3'
miRNA:   3'- aUGCGuucGGCGUUCGGCGc--UGCACG- -5'
26988 5' -57.3 NC_005809.1 + 22232 0.71 0.271185
Target:  5'- gACGCGgcccuGGuuGUcGGCCGCGAUG-GCg -3'
miRNA:   3'- aUGCGU-----UCggCGuUCGGCGCUGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 31241 0.71 0.271185
Target:  5'- cGCGCGgcccAGCUaCGAGCCggGCGACGUGa -3'
miRNA:   3'- aUGCGU----UCGGcGUUCGG--CGCUGCACg -5'
26988 5' -57.3 NC_005809.1 + 15083 0.7 0.278255
Target:  5'- -uUGCAGGCUGCuuuGCUGCGAcCGcGCg -3'
miRNA:   3'- auGCGUUCGGCGuu-CGGCGCU-GCaCG- -5'
26988 5' -57.3 NC_005809.1 + 1687 0.7 0.281123
Target:  5'- cGCGCAGguagucgagaaauucGCCGUggGCCG--GCGUGCc -3'
miRNA:   3'- aUGCGUU---------------CGGCGuuCGGCgcUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.