miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26988 5' -57.3 NC_005809.1 + 8619 0.66 0.501603
Target:  5'- uUGCGCuucucGGCCGCugcGGUgGCGAgGUcGCc -3'
miRNA:   3'- -AUGCGu----UCGGCGu--UCGgCGCUgCA-CG- -5'
26988 5' -57.3 NC_005809.1 + 39750 0.66 0.490077
Target:  5'- cUGCGCGuGGCCGCGagcaccuGGCC-CGACGa-- -3'
miRNA:   3'- -AUGCGU-UCGGCGU-------UCGGcGCUGCacg -5'
26988 5' -57.3 NC_005809.1 + 18454 0.66 0.491119
Target:  5'- aACGUGacGGUCGCGGcGCCGgCGGCGUcgGCc -3'
miRNA:   3'- aUGCGU--UCGGCGUU-CGGC-GCUGCA--CG- -5'
26988 5' -57.3 NC_005809.1 + 3155 0.66 0.491119
Target:  5'- aGCGCAaccaaaaucgcAGCaugGCAAGCC-CGGCGUccGCu -3'
miRNA:   3'- aUGCGU-----------UCGg--CGUUCGGcGCUGCA--CG- -5'
26988 5' -57.3 NC_005809.1 + 39986 0.66 0.480739
Target:  5'- -uUGCAacagGGCgGCAAGCgCGCGcACGcGCu -3'
miRNA:   3'- auGCGU----UCGgCGUUCG-GCGC-UGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 24984 0.66 0.512183
Target:  5'- aACGCGcAGCCGUuuAGCUGCGAaaucgacaacacCG-GCg -3'
miRNA:   3'- aUGCGU-UCGGCGu-UCGGCGCU------------GCaCG- -5'
26988 5' -57.3 NC_005809.1 + 19570 0.66 0.522854
Target:  5'- gGCGC-AGCaGCAGGCCGaccaGGCGaaaGCc -3'
miRNA:   3'- aUGCGuUCGgCGUUCGGCg---CUGCa--CG- -5'
26988 5' -57.3 NC_005809.1 + 37287 0.66 0.522854
Target:  5'- gACGCcguGGCCGaCAAcGCCGCGAacaucaacaCGgugGCc -3'
miRNA:   3'- aUGCGu--UCGGC-GUU-CGGCGCU---------GCa--CG- -5'
26988 5' -57.3 NC_005809.1 + 25205 0.66 0.501603
Target:  5'- cGCGCGA-CCGCuGGCC-CGGCuuguugGUGCg -3'
miRNA:   3'- aUGCGUUcGGCGuUCGGcGCUG------CACG- -5'
26988 5' -57.3 NC_005809.1 + 12602 0.66 0.480739
Target:  5'- gGCuGCAuccaGGCCGUcgugcGCCGCGACGacaaGCa -3'
miRNA:   3'- aUG-CGU----UCGGCGuu---CGGCGCUGCa---CG- -5'
26988 5' -57.3 NC_005809.1 + 31295 0.66 0.501603
Target:  5'- aGCG-AAGCCugGCGA-CCGCGugGUGg -3'
miRNA:   3'- aUGCgUUCGG--CGUUcGGCGCugCACg -5'
26988 5' -57.3 NC_005809.1 + 6281 0.66 0.522854
Target:  5'- cUGgGCAGGCCGaaCAGGUCGCccacgacauuGACG-GCa -3'
miRNA:   3'- -AUgCGUUCGGC--GUUCGGCG----------CUGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 12007 0.66 0.512183
Target:  5'- cACGUcGGCCaGCAgcgcGGCCGUGGcCG-GCg -3'
miRNA:   3'- aUGCGuUCGG-CGU----UCGGCGCU-GCaCG- -5'
26988 5' -57.3 NC_005809.1 + 9721 0.66 0.512183
Target:  5'- aUACGCcucgAAGCCGCGGGCgaacUGCucGugGUGg -3'
miRNA:   3'- -AUGCG----UUCGGCGUUCG----GCG--CugCACg -5'
26988 5' -57.3 NC_005809.1 + 9314 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccguaauugccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 17372 0.67 0.460306
Target:  5'- aGC-CGGGCCaGC-GGUCGCG-CGUGCu -3'
miRNA:   3'- aUGcGUUCGG-CGuUCGGCGCuGCACG- -5'
26988 5' -57.3 NC_005809.1 + 9050 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccguaauugccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 9002 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccggauucgccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 9218 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccggauucgccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5'
26988 5' -57.3 NC_005809.1 + 9362 0.67 0.450264
Target:  5'- aGCGguGGCCGUGccggauucgccAGCgGUGGcCGUGCc -3'
miRNA:   3'- aUGCguUCGGCGU-----------UCGgCGCU-GCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.