Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26988 | 5' | -57.3 | NC_005809.1 | + | 12811 | 0.65 | 0.531453 |
Target: 5'- cGCGCAcgcgccuggcagcAGCCG-AGGCCGaguucuaCGGCGUGg -3' miRNA: 3'- aUGCGU-------------UCGGCgUUCGGC-------GCUGCACg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 14750 | 0.66 | 0.50055 |
Target: 5'- gGCGCca-CCGCGGGCagCGCgcgcgagGACGUGCu -3' miRNA: 3'- aUGCGuucGGCGUUCG--GCG-------CUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 41603 | 0.66 | 0.480739 |
Target: 5'- gGCgGCcaaguGGCUGCAAGCUGCcGugG-GCa -3' miRNA: 3'- aUG-CGu----UCGGCGUUCGGCG-CugCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 6281 | 0.66 | 0.522854 |
Target: 5'- cUGgGCAGGCCGaaCAGGUCGCccacgacauuGACG-GCa -3' miRNA: 3'- -AUgCGUUCGGC--GUUCGGCG----------CUGCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 40897 | 0.66 | 0.522854 |
Target: 5'- --gGCucGCCGCGAGUCcaaGCGcAgGUGCa -3' miRNA: 3'- augCGuuCGGCGUUCGG---CGC-UgCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4922 | 0.66 | 0.512183 |
Target: 5'- aACGUcGGCaGCGAuGcCCGCGACGgucUGCa -3' miRNA: 3'- aUGCGuUCGgCGUU-C-GGCGCUGC---ACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 12007 | 0.66 | 0.512183 |
Target: 5'- cACGUcGGCCaGCAgcgcGGCCGUGGcCG-GCg -3' miRNA: 3'- aUGCGuUCGG-CGU----UCGGCGCU-GCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 12602 | 0.66 | 0.480739 |
Target: 5'- gGCuGCAuccaGGCCGUcgugcGCCGCGACGacaaGCa -3' miRNA: 3'- aUG-CGU----UCGGCGuu---CGGCGCUGCa---CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 9660 | 0.66 | 0.480739 |
Target: 5'- --aGCcAGCCguGCAGGCCGUGGCc-GCa -3' miRNA: 3'- augCGuUCGG--CGUUCGGCGCUGcaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 37421 | 0.66 | 0.522854 |
Target: 5'- gGCGUGAGCaGCGacGGCCGCcuGCGcgGCa -3' miRNA: 3'- aUGCGUUCGgCGU--UCGGCGc-UGCa-CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 18042 | 0.66 | 0.501603 |
Target: 5'- --gGCGGGCUGCuuggGGGCCuuaccggcGCGGgGUGCg -3' miRNA: 3'- augCGUUCGGCG----UUCGG--------CGCUgCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 39986 | 0.66 | 0.480739 |
Target: 5'- -uUGCAacagGGCgGCAAGCgCGCGcACGcGCu -3' miRNA: 3'- auGCGU----UCGgCGUUCG-GCGC-UGCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 14269 | 0.66 | 0.522854 |
Target: 5'- gUugGCcuGCUGCAccauGCUGuCGGCGaUGCg -3' miRNA: 3'- -AugCGuuCGGCGUu---CGGC-GCUGC-ACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 9721 | 0.66 | 0.512183 |
Target: 5'- aUACGCcucgAAGCCGCGGGCgaacUGCucGugGUGg -3' miRNA: 3'- -AUGCG----UUCGGCGUUCG----GCG--CugCACg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 3155 | 0.66 | 0.491119 |
Target: 5'- aGCGCAaccaaaaucgcAGCaugGCAAGCC-CGGCGUccGCu -3' miRNA: 3'- aUGCGU-----------UCGg--CGUUCGGcGCUGCA--CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 39750 | 0.66 | 0.490077 |
Target: 5'- cUGCGCGuGGCCGCGagcaccuGGCC-CGACGa-- -3' miRNA: 3'- -AUGCGU-UCGGCGU-------UCGGcGCUGCacg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 25205 | 0.66 | 0.501603 |
Target: 5'- cGCGCGA-CCGCuGGCC-CGGCuuguugGUGCg -3' miRNA: 3'- aUGCGUUcGGCGuUCGGcGCUG------CACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 8619 | 0.66 | 0.501603 |
Target: 5'- uUGCGCuucucGGCCGCugcGGUgGCGAgGUcGCc -3' miRNA: 3'- -AUGCGu----UCGGCGu--UCGgCGCUgCA-CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 31295 | 0.66 | 0.501603 |
Target: 5'- aGCG-AAGCCugGCGA-CCGCGugGUGg -3' miRNA: 3'- aUGCgUUCGG--CGUUcGGCGCugCACg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 18454 | 0.66 | 0.491119 |
Target: 5'- aACGUGacGGUCGCGGcGCCGgCGGCGUcgGCc -3' miRNA: 3'- aUGCGU--UCGGCGUU-CGGC-GCUGCA--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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