miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26988 5' -57.3 NC_005809.1 + 23713 0.69 0.331864
Target:  5'- aGCGCccAGGUCGCGGGCCagugccucgGUGGCGcGCa -3'
miRNA:   3'- aUGCG--UUCGGCGUUCGG---------CGCUGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 27794 0.71 0.244347
Target:  5'- aGCGCGcGCCGCGcAGCCGCaGcACGUccucGCg -3'
miRNA:   3'- aUGCGUuCGGCGU-UCGGCG-C-UGCA----CG- -5'
26988 5' -57.3 NC_005809.1 + 30304 0.71 0.264261
Target:  5'- aGCGCcc-CUGCGAGCCGCuuuGCGUGUa -3'
miRNA:   3'- aUGCGuucGGCGUUCGGCGc--UGCACG- -5'
26988 5' -57.3 NC_005809.1 + 22232 0.71 0.271185
Target:  5'- gACGCGgcccuGGuuGUcGGCCGCGAUG-GCg -3'
miRNA:   3'- aUGCGU-----UCggCGuUCGGCGCUGCaCG- -5'
26988 5' -57.3 NC_005809.1 + 31241 0.71 0.271185
Target:  5'- cGCGCGgcccAGCUaCGAGCCggGCGACGUGa -3'
miRNA:   3'- aUGCGU----UCGGcGUUCGG--CGCUGCACg -5'
26988 5' -57.3 NC_005809.1 + 15083 0.7 0.278255
Target:  5'- -uUGCAGGCUGCuuuGCUGCGAcCGcGCg -3'
miRNA:   3'- auGCGUUCGGCGuu-CGGCGCU-GCaCG- -5'
26988 5' -57.3 NC_005809.1 + 1687 0.7 0.281123
Target:  5'- cGCGCAGguagucgagaaauucGCCGUggGCCG--GCGUGCc -3'
miRNA:   3'- aUGCGUU---------------CGGCGuuCGGCgcUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 42128 0.7 0.29209
Target:  5'- cGCgGCGAGCagaaggacaGCAcuaagaccaacguGGcCCGCGACGUGCu -3'
miRNA:   3'- aUG-CGUUCGg--------CGU-------------UC-GGCGCUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 34844 0.69 0.315807
Target:  5'- --aGCAAGCCG---GCCGCcgaGCGUGCg -3'
miRNA:   3'- augCGUUCGGCguuCGGCGc--UGCACG- -5'
26988 5' -57.3 NC_005809.1 + 27428 0.72 0.231776
Target:  5'- gGCGCAccgcgcccggcGGCCGCAGGCCcUGGCGcUGg -3'
miRNA:   3'- aUGCGU-----------UCGGCGUUCGGcGCUGC-ACg -5'
26988 5' -57.3 NC_005809.1 + 28077 0.72 0.219754
Target:  5'- --aGCGGGCaGguGGCCGCGGCGUcGUa -3'
miRNA:   3'- augCGUUCGgCguUCGGCGCUGCA-CG- -5'
26988 5' -57.3 NC_005809.1 + 22526 0.72 0.213945
Target:  5'- cGCaGCGAGCaCGCGcAGCgCGCG-CGUGCc -3'
miRNA:   3'- aUG-CGUUCG-GCGU-UCG-GCGCuGCACG- -5'
26988 5' -57.3 NC_005809.1 + 15333 0.77 0.097797
Target:  5'- -gUGCAGGCgGUGAGCCGUaggguucgGACGUGCg -3'
miRNA:   3'- auGCGUUCGgCGUUCGGCG--------CUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 10329 0.76 0.122955
Target:  5'- cGC-CAGGCCGUAGccgucGCUGCGGCGUGUg -3'
miRNA:   3'- aUGcGUUCGGCGUU-----CGGCGCUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 36078 0.75 0.129758
Target:  5'- cUACgGCAAGCgcgugaaUGCGGGCCugcGCGGCGUGCa -3'
miRNA:   3'- -AUG-CGUUCG-------GCGUUCGG---CGCUGCACG- -5'
26988 5' -57.3 NC_005809.1 + 9408 0.74 0.164634
Target:  5'- cGCGCAGGCCGCGGGCUugcaggucuugaauaGCGuCGUuggucGCg -3'
miRNA:   3'- aUGCGUUCGGCGUUCGG---------------CGCuGCA-----CG- -5'
26988 5' -57.3 NC_005809.1 + 8557 0.73 0.181306
Target:  5'- cGCGCucgaccucauccuGGGCguCGUAGGCCGCG-CGUGCg -3'
miRNA:   3'- aUGCG-------------UUCG--GCGUUCGGCGCuGCACG- -5'
26988 5' -57.3 NC_005809.1 + 35573 0.73 0.186847
Target:  5'- cACGCGAGCCGacccGCuCGCG-CGUGUg -3'
miRNA:   3'- aUGCGUUCGGCguu-CG-GCGCuGCACG- -5'
26988 5' -57.3 NC_005809.1 + 32615 0.73 0.197304
Target:  5'- cGCGUcaaGGGCCGCGAcGCCGCGGuCGcUGUc -3'
miRNA:   3'- aUGCG---UUCGGCGUU-CGGCGCU-GC-ACG- -5'
26988 5' -57.3 NC_005809.1 + 25760 0.72 0.213945
Target:  5'- gGCGCGcugcugggcGGCgGCAacgauGGCCGCGAUGcGCg -3'
miRNA:   3'- aUGCGU---------UCGgCGU-----UCGGCGCUGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.