Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26988 | 5' | -57.3 | NC_005809.1 | + | 1687 | 0.7 | 0.281123 |
Target: 5'- cGCGCAGguagucgagaaauucGCCGUggGCCG--GCGUGCc -3' miRNA: 3'- aUGCGUU---------------CGGCGuuCGGCgcUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 1981 | 0.7 | 0.292833 |
Target: 5'- aAgGCAcGCUGUAGGCCGCGAgGUc- -3' miRNA: 3'- aUgCGUuCGGCGUUCGGCGCUgCAcg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 2350 | 0.67 | 0.420882 |
Target: 5'- cGCGCGugcGCCGCAauucGGCCuGC-ACGUGg -3' miRNA: 3'- aUGCGUu--CGGCGU----UCGG-CGcUGCACg -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 3155 | 0.66 | 0.491119 |
Target: 5'- aGCGCAaccaaaaucgcAGCaugGCAAGCC-CGGCGUccGCu -3' miRNA: 3'- aUGCGU-----------UCGg--CGUUCGGcGCUGCA--CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 3870 | 0.68 | 0.392688 |
Target: 5'- gGCGCcgucGCUGUAGGCCGCGcugcCGUcGCc -3' miRNA: 3'- aUGCGuu--CGGCGUUCGGCGCu---GCA-CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4025 | 0.69 | 0.340115 |
Target: 5'- aGCGaUAGGCUucaaaGCcGGCCGCGGCGaGCg -3' miRNA: 3'- aUGC-GUUCGG-----CGuUCGGCGCUGCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4200 | 0.73 | 0.186847 |
Target: 5'- cAUGUuGGCCGCGAGCacguCGCGGCuUGCg -3' miRNA: 3'- aUGCGuUCGGCGUUCG----GCGCUGcACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4381 | 0.66 | 0.512183 |
Target: 5'- aUGCGCAGccaggcGCCGuCGcGCCGgGccuugaGCGUGCg -3' miRNA: 3'- -AUGCGUU------CGGC-GUuCGGCgC------UGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4426 | 0.72 | 0.219754 |
Target: 5'- -uCGUAGGUCGUAcccGGCCGCaacaccgccaGGCGUGCg -3' miRNA: 3'- auGCGUUCGGCGU---UCGGCG----------CUGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 4922 | 0.66 | 0.512183 |
Target: 5'- aACGUcGGCaGCGAuGcCCGCGACGgucUGCa -3' miRNA: 3'- aUGCGuUCGgCGUU-C-GGCGCUGC---ACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 5012 | 0.67 | 0.420882 |
Target: 5'- gGCGCAGuCCGCuuucagcGCCGCGAUGccccGCu -3' miRNA: 3'- aUGCGUUcGGCGuu-----CGGCGCUGCa---CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 5242 | 0.68 | 0.401949 |
Target: 5'- cGCGCAguucGGCCgGCAGGUCGgGGuCG-GCa -3' miRNA: 3'- aUGCGU----UCGG-CGUUCGGCgCU-GCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 5319 | 0.79 | 0.075329 |
Target: 5'- -cCGUAGGCCGCGAGCaCGUGGCGcaGCa -3' miRNA: 3'- auGCGUUCGGCGUUCG-GCGCUGCa-CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 6176 | 0.72 | 0.202721 |
Target: 5'- aGCGCAGGCCGgucuuGCCGCaGCGUuuGCa -3' miRNA: 3'- aUGCGUUCGGCguu--CGGCGcUGCA--CG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 6281 | 0.66 | 0.522854 |
Target: 5'- cUGgGCAGGCCGaaCAGGUCGCccacgacauuGACG-GCa -3' miRNA: 3'- -AUgCGUUCGGC--GUUCGGCG----------CUGCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 7158 | 0.68 | 0.392688 |
Target: 5'- gACGUugAAGCC-CAGGCC-CGACGcGCu -3' miRNA: 3'- aUGCG--UUCGGcGUUCGGcGCUGCaCG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 7250 | 0.71 | 0.264261 |
Target: 5'- gGCGCGGGCCGau-GUCGCcGGCcuuGUGCa -3' miRNA: 3'- aUGCGUUCGGCguuCGGCG-CUG---CACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 8123 | 0.67 | 0.430548 |
Target: 5'- cGCGC-GGCCgGCGuuGGuuGUGgGCGUGCg -3' miRNA: 3'- aUGCGuUCGG-CGU--UCggCGC-UGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 8392 | 0.67 | 0.460306 |
Target: 5'- cGCGCuGGCUGCGuagccagucGGCCaGgGcCGUGCg -3' miRNA: 3'- aUGCGuUCGGCGU---------UCGG-CgCuGCACG- -5' |
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26988 | 5' | -57.3 | NC_005809.1 | + | 8491 | 0.68 | 0.365751 |
Target: 5'- gACGCGAGUaaugaagaaaUGCAgaugcgggugGGCCGUGGCGUagGCg -3' miRNA: 3'- aUGCGUUCG----------GCGU----------UCGGCGCUGCA--CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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